Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Query= BRENDA::P96197 (360 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3945 Length = 360 Score = 518 bits (1335), Expect = e-152 Identities = 280/372 (75%), Positives = 305/372 (81%), Gaps = 24/372 (6%) Query: 1 MSKQILVLPGDGIGPEIMAEAVKVLQLANEKYQLGFVLGYDELGGAAVDKYGVPLADETL 60 MSKQIL+LPGDGIGPEIMAEAVKVL+LA++K+ LGF L +D +GGAA+DK+GVPLADETL Sbjct: 1 MSKQILILPGDGIGPEIMAEAVKVLELASDKFALGFELSHDVIGGAAIDKHGVPLADETL 60 Query: 61 ERARR------------RCHPARRRRRSEMGRHRPGHPPGARPAENPFATGPVRQPAPGV 108 ERAR + R R E G + G G +R P + Sbjct: 61 ERARAADAVLLGAVGGPKWDAIERDIRPERGLLKIRAQLGL--------FGNLR---PAI 109 Query: 109 LYPQLAEASTLRPEVVAGLDILIVRELTGGIYFGAPRESRLLANGERMAYDTLPYSESEI 168 LYPQLAEAS+L+PE+VAGLDILIVRELTGGIYFGAPR +R L NGER +YDTLPYSESEI Sbjct: 110 LYPQLAEASSLKPEIVAGLDILIVRELTGGIYFGAPRGTRTLENGERQSYDTLPYSESEI 169 Query: 169 RRIAKVGFDMARVRGKKLCSVDKANVLASSQLWRAVVEEVAKDYPDVVLSHMYVDNAAMQ 228 RRIA+VGFDMA VRGKKLCSVDKANVLASSQLWR VVE+VAKDYP+V LSHMYVDNAAMQ Sbjct: 170 RRIARVGFDMAMVRGKKLCSVDKANVLASSQLWREVVEQVAKDYPEVELSHMYVDNAAMQ 229 Query: 229 LVRAPKQFDVIVTDNMFGDILSDEASMLTGSIGMLPSASLDADNKGMYEPCHGSRRPDIA 288 LVRAPKQFDVIVTDNMFGDILSD+ASMLTGSIGMLPSASLD +NKGMYEPCHGS PDIA Sbjct: 230 LVRAPKQFDVIVTDNMFGDILSDQASMLTGSIGMLPSASLDTNNKGMYEPCHGS-APDIA 288 Query: 289 GKGIANPLATILSVSMMLRYSFGQVEAANAIEQAVSKVLDQGLRTGDIWSEGCRKVGTAE 348 GKGIANPLATILSVSMMLRYSF Q AA+AIE+AVS VLDQGLRTGDIWS GC KVGT E Sbjct: 289 GKGIANPLATILSVSMMLRYSFNQQAAADAIEKAVSLVLDQGLRTGDIWSAGCTKVGTQE 348 Query: 349 MGDAVVAALATL 360 MGDAVVAAL L Sbjct: 349 MGDAVVAALRNL 360 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 472 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 360 Length of database: 360 Length adjustment: 29 Effective length of query: 331 Effective length of database: 331 Effective search space: 109561 Effective search space used: 109561 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate PfGW456L13_3945 (3-isopropylmalate dehydrogenase (EC 1.1.1.85))
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.12893.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12893.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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