GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argB in Pseudomonas fluorescens FW300-N1B4

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate Pf1N1B4_2121 Acetylglutamate kinase (EC 2.7.2.8)

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2121
          Length = 301

 Score =  537 bits (1383), Expect = e-157
 Identities = 274/301 (91%), Positives = 288/301 (95%)

Query: 1   MTLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGI 60
           MTL R+ AA  AKVLSEALPYIRR+VGKTLVIKYGGNAMESEELK GFARD+VLMKAVGI
Sbjct: 1   MTLEREAAANTAKVLSEALPYIRRYVGKTLVIKYGGNAMESEELKTGFARDIVLMKAVGI 60

Query: 61  NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHG 120
           NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDA TMDVVEMVLGGQVNKDIVNLINRHG
Sbjct: 61  NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAQTMDVVEMVLGGQVNKDIVNLINRHG 120

Query: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIP 180
           GSAIGLTGKDAELIRAKKLTVTRQTPEMT+PEIIDIGHVGEV G+N  LLN+LVKGDFIP
Sbjct: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTQPEIIDIGHVGEVVGINTDLLNLLVKGDFIP 180

Query: 181 VIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVN 240
           VIAPIGVG+NGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK G VLTGL+T+QV+
Sbjct: 181 VIAPIGVGANGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKSGTVLTGLTTQQVD 240

Query: 241 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRKR 300
           +LIADGTIYGGMLPKIRCALEAVQGGV S+ IIDGRVPNA+LLEIFTD+GVGTLISNRKR
Sbjct: 241 DLIADGTIYGGMLPKIRCALEAVQGGVGSSLIIDGRVPNAILLEIFTDTGVGTLISNRKR 300

Query: 301 H 301
           H
Sbjct: 301 H 301


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 469
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 301
Length adjustment: 27
Effective length of query: 274
Effective length of database: 274
Effective search space:    75076
Effective search space used:    75076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Pf1N1B4_2121 (Acetylglutamate kinase (EC 2.7.2.8))
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.16082.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16082.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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