Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate Pf6N2E2_3364 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Query= BRENDA::P00968 (1073 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3364 Length = 1073 Score = 1601 bits (4146), Expect = 0.0 Identities = 808/1073 (75%), Positives = 918/1073 (85%), Gaps = 1/1073 (0%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDP M Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPAM 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 ADATYIEPI W+ V KIIEKERPDA+LPTMGGQTALNCAL+LER+GVLE+FGV MIGA A Sbjct: 61 ADATYIEPIKWQTVAKIIEKERPDALLPTMGGQTALNCALDLEREGVLEKFGVEMIGANA 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180 D IDKAEDR RFD AMK IGL+ RSGIAH+MEEA AV +GFPCIIRPSFTMGG+GGG Sbjct: 121 DTIDKAEDRSRFDKAMKSIGLDCPRSGIAHSMEEANAVLERLGFPCIIRPSFTMGGTGGG 180 Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDK DNCIIVCSIENFD M Sbjct: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPM 240 Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300 G+HTGDSITVAPAQTLTDKEYQI+RNAS+AVLREIGVETGGSNVQF + P GR++VIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL NDITGG+TPASFEPSIDYVVTK+P Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELSNDITGGKTPASFEPSIDYVVTKLP 360 Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420 RF FEKFA A+ RLTTQMKSVGEVMAIGRT QESLQKALRGLEVG G DPK+ L DPE+ Sbjct: 361 RFAFEKFAKADARLTTQMKSVGEVMAIGRTFQESLQKALRGLEVGVCGLDPKLDLADPES 420 Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480 ++ ++REL GA+RIWY+ADAFRAG++V+ +F + ID WFLVQIE+L++ EEKV +G Sbjct: 421 MSVLKRELTVPGAERIWYVADAFRAGMTVEQIFGMNMIDPWFLVQIEDLIKEEEKVKTLG 480 Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540 ++ ++ D + +LKRKGF+D RLAKL GV E +R R + ++ PVYKRVDTCAAEFATDT Sbjct: 481 MSSIDRDTMFRLKRKGFSDMRLAKLLGVTEKSLRAHRHKLEVFPVYKRVDTCAAEFATDT 540 Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600 AY+YSTYEEECEA PST R+KIM+LGGGPNRIGQGIEFDYCCVHA+LALR+DGYETIMVN Sbjct: 541 AYLYSTYEEECEAAPST-RDKIMILGGGPNRIGQGIEFDYCCVHAALALRDDGYETIMVN 599 Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVR+EKPKGVIVQYGGQTPLKLARALEAAGVP Sbjct: 600 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTPLKLARALEAAGVP 659 Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720 +IGTSPDAIDRAEDRERFQ VERL L+QP NATV + + A+ A +IGYPLVVRPSYVL Sbjct: 660 IIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLVVRPSYVL 719 Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780 GGRAMEIVY E +L+RY + AV VSND+PVLLDHFL+ A+E+DVDA+ DG+ V+IG IM+ Sbjct: 720 GGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVSDGKDVVIGAIMQ 779 Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840 HIEQAGVHSGDSACSLP Y+L IQD MR+QV+K+A EL V GLMNVQ A++ ++Y+I Sbjct: 780 HIEQAGVHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGLMNVQLALQGEDIYVI 839 Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900 EVNPRA+RTVPFVSK GV LA +AARVMAGK+L E TKE+IP +YSVKE V PF KF Sbjct: 840 EVNPRASRTVPFVSKCIGVSLAMIAARVMAGKTLKELNFTKEIIPNFYSVKEAVFPFAKF 899 Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960 PGVDP+LGPEM+STGEVMGVG TF EAFAKAQ+G++ + G A +SVR+ DK V + Sbjct: 900 PGVDPILGPEMKSTGEVMGVGDTFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPLVAGV 959 Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020 A L+ GFE+ AT GTA ++ AG+ R VNKV EGRPH+ D IKN E T IINTT GR Sbjct: 960 ARDLINLGFEVVATAGTARLIEAAGLKVRRVNKVTEGRPHVVDMIKNDEVTLIINTTEGR 1019 Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073 ++I DS IRR+ALQ+K++ TT+ G A AL + V +Q++HA +K Sbjct: 1020 QSIADSYSIRRNALQHKIYCTTTIAAGEAICEALKFGPEKTVRRLQDLHAGLK 1072 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3125 Number of extensions: 135 Number of successful extensions: 12 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1073 Length of database: 1073 Length adjustment: 45 Effective length of query: 1028 Effective length of database: 1028 Effective search space: 1056784 Effective search space used: 1056784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate Pf6N2E2_3364 (Carbamoyl-phosphate synthase large chain (EC 6.3.5.5))
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.20827.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20827.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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