Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 208563 DVU3048 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >MicrobesOnline__882:208563 Length = 349 Score = 324 bits (830), Expect = 2e-93 Identities = 171/330 (51%), Positives = 224/330 (67%), Gaps = 6/330 (1%) Query: 7 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 66 VA+ GATGAVG ML+ L+ R+FP E+ AS RS G F + V+ + E ++ Sbjct: 8 VAVVGATGAVGREMLKTLEGRDFPAAEVIPFASARSAGSKVPFRDGELTVRELTEDCFTG 67 Query: 67 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNI 126 + IALFSAGG S K+AP AA+AG VVIDN+S +R D PLVVPEVNP + + I Sbjct: 68 IDIALFSAGGSTSEKFAPHAAKAGCVVIDNSSAWRMDARCPLVVPEVNPHHLEA--HNGI 125 Query: 127 IANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAE 186 IANPNCSTIQM+VALKP++DA I+R+ V+TYQ+VSG G+ IDEL Q ++ N E Sbjct: 126 IANPNCSTIQMVVALKPLHDAARIKRVIVSTYQAVSGTGQKAIDELDRQVRQMFNMMEPE 185 Query: 187 TNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHA 246 + +IAFNC+P ID F+DN YTKEEMKMV ET KI +DPS+ V TCVRVPVFYGH+ Sbjct: 186 VQVYPHRIAFNCLPHIDVFLDNDYTKEEMKMVHETVKIMDDPSVKVTATCVRVPVFYGHS 245 Query: 247 EAVHVETRAPIDAEQVMDMLEQTDGIELFRGAD---FPTQVRDAGGKDHVLVGRVRNDIS 303 E+V++ET + A +L Q G++++ +P + DA G+D VGR+R D + Sbjct: 246 ESVNIETEKKLTARDARAILSQAPGVQVYDNPGQKMYPMPI-DAAGEDATFVGRIREDET 304 Query: 304 HHSGINLWVVADNVRKGAATNAVQIAELLV 333 +G+NLW+VADN+RKGAA NAVQIAE L+ Sbjct: 305 IENGLNLWIVADNIRKGAALNAVQIAEELI 334 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 352 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 349 Length adjustment: 29 Effective length of query: 308 Effective length of database: 320 Effective search space: 98560 Effective search space used: 98560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 208563 DVU3048 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.1335.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1335.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.