Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_011384021.1 AMB_RS08140 aspartate kinase
Query= SwissProt::C3JXY0 (413 letters) >NCBI__GCF_000009985.1:WP_011384021.1 Length = 406 Score = 437 bits (1125), Expect = e-127 Identities = 233/410 (56%), Positives = 307/410 (74%), Gaps = 8/410 (1%) Query: 1 MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGD 60 MA IV KFGGTSV +ERI+ VA++VK+ DAG+ + VV+SAMSG TN+L+ ++ Sbjct: 1 MARIVMKFGGTSVADIERIKNVANRVKREFDAGNQVAVVVSAMSGATNQLVAWCNQVA-- 58 Query: 61 QQPL--PRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQI 118 PL RE D +V+TGEQVT LLA+AL + GV A S+ G Q+ I TD H KARI+ I Sbjct: 59 --PLHDAREYDAVVATGEQVTTGLLAIALQELGVNARSWCGWQLPIRTDGVHGKARIMSI 116 Query: 119 DDQKIRTDLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVD 178 + ++ + G V VVAGFQG+ I TLGRGGSDT+ VALAAAL AD C IYTDVD Sbjct: 117 ETDEMIARMGKGEVAVVAGFQGLGPDNRIATLGRGGSDTSAVALAAALHADRCDIYTDVD 176 Query: 179 GVYTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKEGP 238 GVYTTDPR+VSVA++LDKIT+EEMLE+AS+G+KVLQ R+VE A K+ V ++VL SF++ P Sbjct: 177 GVYTTDPRIVSVAKKLDKITYEEMLELASVGAKVLQTRSVEMAMKHRVRVQVLSSFEDKP 236 Query: 239 GTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANIEVDMIVQ 298 GTL+ DE+E +E+ ++SGIA++RDEAK+T+ V D PGVA I GP++ A + VDMIVQ Sbjct: 237 GTLV-CDEDEIVEKELVSGIAYSRDEAKITLVRVADRPGVAASIFGPLAEAAVNVDMIVQ 295 Query: 299 NVSHD-NTTDFTFTVHRNEYDAAERILQNTAKEIGAREVVGDTKIAKVSIVGVGMRSHAG 357 NVS D +TD TFTV + + A+++L++ +G +++ D + KVS++GVGMRSHAG Sbjct: 296 NVSEDGKSTDLTFTVGNADLERAKKVLEDAKGNLGFEKLLADPNVVKVSVIGVGMRSHAG 355 Query: 358 VASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 407 +A +MF+ LA E INIQ+ISTSEIK+SV+IEEKY ELA+RALHTA+ LDA Sbjct: 356 IAQKMFQTLASEGINIQVISTSEIKISVLIEEKYTELALRALHTAYGLDA 405 Lambda K H 0.316 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 452 Number of extensions: 14 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 413 Length of database: 406 Length adjustment: 31 Effective length of query: 382 Effective length of database: 375 Effective search space: 143250 Effective search space used: 143250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate WP_011384021.1 AMB_RS08140 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.16632.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16632.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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