GapMind for Amino acid biosynthesis

 

L-histidine biosynthesis

Analysis of pathway his in 276 genomes

Genome Best path
Acidovorax caeni R-24608 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Actinokineospora bangkokensis 44EHW prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Actinomyces timonensis 7400942 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Algiphilus aromaticivorans DG1253 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Algoriphagus aquaeductus T4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Algoriphagus machipongonensis PR1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Alicyclobacillus ferrooxydans TC-34 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Alishewanella agri BL06 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Alistipes indistinctus YIT 12060 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Alistipes shahii WAL 8301 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Alkalitalea saponilacus SC/BZ-SP2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Amantichitinum ursilacus IGB-41 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Amphibacillus jilinensis Y1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Amphritea japonica JAMM 1866 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Amycolatopsis halophila YIM 93223 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Amycolatopsis xylanica CPCC 202699 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Aquimarina agarilytica ZC1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Aquimarina longa SW024 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Aquimarina macrocephali JAMB N27 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Archaeoglobus sulfaticallidus PM70-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Arcticibacter svalbardensis MN12-7 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Ardenticatena maritima 110S prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Arenimonas metalli CF5-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Arenitalea lutea P7-3-5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Azospirillum humicireducens SgZ-5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Azospirillum thiophilum BV-S prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus altitudinis 41KF2b prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus coahuilensis m4-4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus cytotoxicus NVH 391-98 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus horneckiae 1P01SC prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus okhensis Kh10-101 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus safensis FO-36b prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacillus velezensis CBMB205 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacteroides clarus YIT 12056 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacteroides faecis MAJ27 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacteroides fluxus YIT 12057 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bacteroides oleiciplenus YIT 12058 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Barnesiella intestinihominis YIT 11860 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Belnapia rosea CPCC 100156 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bizionia argentinensis JUB59 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bradyrhizobium diazoefficiens USDA110 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Brevibacterium jeotgali SJ5-8 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Brucella inopinata BO1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Brucella microti CCM 4915 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Bryobacter aggregatus MPL3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Caldicellulosiruptor hydrothermalis 108 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Caldicellulosiruptor kronotskyensis 2002 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Carboxydothermus pertinax Ug1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Catellicoccus marimammalium M35/04/3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Chromobacterium vaccinii MWU205 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Chryseobacterium angstadtii KM prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Chryseobacterium arthrosphaerae CC-VM-7 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Chryseobacterium viscerum 687B-08 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Cloacibacillus porcorum CL-84 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Cobetia crustatorum JO1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Collimonas arenae Ter10 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Collimonas pratensis Ter91 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Collinsella tanakaei YIT 12063 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Coprobacter fastidiosus NSB1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Corynebacterium deserti GIMN1.010 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Corynebacterium frankenforstense ST18 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Corynebacterium lactis RW2-5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Croceitalea dokdonensis DOKDO 023 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Cronobacter condimenti 1330 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Cronobacter muytjensii ATCC 51329 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Cronobacter universalis NCTC 9529 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Desulfatitalea tepidiphila S28bF prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Desulfotomaculum hydrothermale Lam5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dethiosulfovibrio salsuginis USBA 82 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Devosia chinhatensis IPL18 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Devriesea agamarum IMP2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dialister succinatiphilus YIT 11850 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dietzia timorensis ID05-A0528 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dokdonella koreensis DS-123 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Domibacillus robiginosus WS 4628 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Duganella sacchari Sac-22 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dyadobacter tibetensis Y620-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Dyella jiangningensis SBZ3-12 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Endozoicomonas montiporae CL-33 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Enterococcus termitis LMG 8895 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Enterorhabdus caecimuris B7 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Epibacterium ulvae U95 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Erythrobacter gangjinensis K7-2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Erythrobacter marinus HWDM-33 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Ethanoligenens harbinense YUAN-3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Fervidicella metallireducens AeB prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Fibrella aestuarina BUZ 2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flammeovirga pacifica WPAGA1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flaviramulus ichthyoenteri Th78 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flavobacterium beibuense F44-8 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flavobacterium glycines Gm-149 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flavobacterium sp. LM5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Flavobacterium ummariense DS-12 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Frischella perrara PEB0191 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Galbibacter marinus ck-I2-15 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Gallaecimonas xiamenensis 3-C-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Geobacter daltonii FRC-32 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Gillisia marina CBA3202 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Gracilibacillus halophilus YIM-C55.5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Granulicella mallensis MP5ACTX8 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Granulicella tundricola MP5ACTX9 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Hafnia paralvei ATCC 29927 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Haladaptatus cibarius D43 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halioglobus japonicus S1-36 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halobacillus alkaliphilus FP5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halococcus hamelinensis 100A6 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halomonas salina B6 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halomonas smyrnensis AAD6 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halomonas stevensii S18214 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halomonas titanicae BH1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halomonas xinjiangensis TRM 0175 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halopiger salifodinae KCY07-B2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Halostagnicola larsenii XH-48 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Haloterrigena daqingensis JX313 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Herbaspirillum aquaticum IEH 4430 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Hippea alviniae EP5-r prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Hippea jasoniae Mar08-272r prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Hoeflea phototrophica DFL-43 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Hyphomicrobium nitrativorans NL23 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Imtechella halotolerans K1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Indibacter alkaliphilus LW1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Jannaschia aquimarina GSW-M26 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Jeotgalibacillus soli P9 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Kangiella geojedonensis YCS-5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Knoellia flava TL1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Kocuria flava HO-9041 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Kocuria turfanensis HO-9042 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Laceyella sediminis RHA1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lacinutrix algicola AKS293 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lacinutrix himadriensis E4-9a prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lacinutrix mariniflava AKS432 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus curieae CCTCC M 2011381 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus delbrueckii ZN7a-9 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus hokkaidonensis LOOC260 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus oryzae SG293 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus pobuzihii E100301 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus shenzhenensis LY-73 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lactobacillus silagei IWT126 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Leeuwenhoekiella blandensis MED217 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lentibacillus jeotgali Grbi prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Limnohabitans curvus MWH-C5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Limnohabitans parvus II-B4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Listeria fleischmannii LU2006-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Luteimonas huabeiensis HB2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Luteipulveratus mongoliensis MN07-A0370 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lutibaculum baratangense AMV1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Lysobacter daejeonensis GH1-9 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Magnetovibrio blakemorei MV-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marinicella litoralis KMM 3900 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Mariniradius saccharolyticus AK6 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marinobacter algicola DG893 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marinobacter guineae M3B prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marinobacter psychrophilus 20041 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marinomonas arctica 328 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Marivita geojedonensis DPG-138 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Martelella endophytica YC6887 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Megamonas funiformis YIT 11815 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Mesorhizobium ciceri WSM1271 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methanobacterium arcticum M2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methanobacterium veterum MK4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methanocella arvoryzae MRE50 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methanococcus aeolicus Nankai-3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methanoculleus horonobensis T10 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methanolinea tarda NOBI-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methanosarcina soligelidi SMA-21 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methanospirillum lacunae Ki8-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methanospirillum stamsii Pt1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN?, hisD
Methylibium petroleiphilum PM1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methylobacterium gossipiicola Gh-105 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methylocapsa aurea KYG prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Methylotenera versatilis 301 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Microbacterium profundi Shh49 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Microvirga lotononidis WSM3557 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Moritella dasanensis ArB 0140 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Mucilaginibacter gossypii Gh-67 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Mucilaginibacter gossypiicola Gh-48 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Mucilaginibacter mallensis MP1X4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nafulsella turpanensis ZLM-10 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Natronomonas moolapensis 8.8.11 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nautilia profundicola AmH prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Neiella marina J221 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Neptunomonas antarctica S3-22 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nocardioides daejeonensis MJ31 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nocardioides dokdonensis FR1436 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nocardiopsis baichengensis YIM 90130 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Nocardiopsis gilva YIM 90087 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Novosphingobium barchaimii LL02 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Novosphingobium fuchskuhlense FNE08-7 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Novosphingobium lindaniclasticum LE124 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Oceanisphaera arctica V1-41 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Ochrobactrum rhizosphaerae PR17 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Ochrobactrum thiophenivorans DSM 7216 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Oscillibacter ruminantium GH1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Paenisporosarcina indica PN2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Palaeococcus pacificus DY20341 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Paludibacter propionicigenes WB4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pandoraea thiooxydans ATSB16 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pantoea rwandensis LMG 26275 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pedobacter arcticus A12 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Photobacterium gaetbulicola Gung47 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Photobacterium jeanii R-40508 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Phyllobacterium brassicacearum STM 196 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Phyllobacterium endophyticum PEPV15 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Phyllobacterium leguminum ORS 1419 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Planktomarina temperata RCA23 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Planococcus halocryophilus Or1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pleomorphomonas diazotrophica R5-392 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Polaribacter dokdonensis DSW-5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pontibacillus litoralis JSM 072002 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pontibacter lucknowensis DM9 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pontibacter ramchanderi LP43 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pontimonas salivibrio CL-TW6 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Porphyrobacter dokdonensis DSW-74 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pseudoalteromonas arctica A 37-1-2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pseudomonas baetica a390 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pseudomonas litoralis 2SM5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pseudomonas taeanensis MS-3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Pseudovibrio axinellae Ad2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Psychrobacter arcticus 273-4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Psychrobacter cryohalolentis K5 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Psychromonas ingrahamii 37 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Psychromonas ossibalaenae JAMM 0738 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhizobium freirei PRF 81 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhizobium grahamii CCGE 502 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhizobium subbaraonis JC85 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodanobacter denitrificans 2APBS1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodobacter johrii JA192 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodobacter maris JA276 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodobacter ovatus JA234 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodobacter viridis JA737 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodococcus qingshengii djl-6-2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rhodopseudomonas pseudopalustris DSM 123 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Roseateles aquatilis CCUG 48205 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Roseivirga spongicola UST030701-084 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Rubrivirga marina SAORIC-28 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Ruegeria conchae TW15 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Saccharomonospora marina XMU15 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Salinicoccus carnicancri Crm prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Serinicoccus profundi MCCC 1A05965 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Shewanella halifaxensis HAW-EB4 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Skermanella stibiiresistens SB22 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Snodgrassella alvi wkB2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphaerochaeta globosa Buddy prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphaerochaeta pleomorpha Grapes prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingobium baderi LL03 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingobium czechense LL01 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingobium quisquiliarum P25 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingomonas histidinilytica UM2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingomonas indica Dd16 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingomonas laterariae LNB2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingopyxis indica DS15 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sphingopyxis terrae UI2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sporolactobacillus vineae SL153 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptacidiphilus oryzae TH49 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptococcus anginosus CCUG 39159 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptococcus massiliensis 4401825 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptococcus oralis 7747 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptococcus oralis AZ_3a prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Streptomyces kebangsaanensis SUK12 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Succinatimonas hippei YIT 12066 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Sulfurimonas gotlandica GD1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Tatumella morbirosei LMG 23360 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thauera humireducens SgZ-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thermoactinomyces daqus H-18 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN*, hisD
Thermobifida halotolerans YIM 90462 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thermodesulfovibrio aggregans TGE-P1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thermophagus xiamenensis HS1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thermovenabulum gondwanense R270 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thioclava dalianensis DLFJ1-1 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Thiohalospira halophila HL 3 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Tistlia consotensis USBA 355 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Vagococcus penaei CD276 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Verminephrobacter eiseniae EF01-2 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Weissella oryzae SG25 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Williamsia sterculiae CPCC 203464 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD
Yersinia intermedia Y228 prs, hisG, hisI, hisE, hisA, hisF, hisH, hisB, hisC, hisN, hisD

Confidence: high confidence medium confidence low confidence
? – known gap: despite the lack of a good candidate for this step, this organism (or a related organism) performs the pathway

This GapMind analysis is from Jul 26 2024. The underlying query database was built on Jul 25 2024.

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About GapMind

Each pathway is defined by a set of rules based on individual steps or genes. Candidates for each step are identified by using ublast (a fast alternative to protein BLAST) against a database of manually-curated proteins (most of which are experimentally characterized) or by using HMMer with enzyme models (usually from TIGRFam). Ublast hits may be split across two different proteins.

A candidate for a step is "high confidence" if either:

where "other" refers to the best ublast hit to a sequence that is not annotated as performing this step (and is not "ignored").

Otherwise, a candidate is "medium confidence" if either:

Other blast hits with at least 50% coverage are "low confidence."

Steps with no high- or medium-confidence candidates may be considered "gaps." For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. For diverse bacteria and archaea that can utilize a carbon source, there is a complete high-confidence catabolic pathway (including a transporter) just 38% of the time, and there is a complete medium-confidence pathway 63% of the time. Gaps may be due to:

GapMind relies on the predicted proteins in the genome and does not search the six-frame translation. In most cases, you can search the six-frame translation by clicking on links to Curated BLAST for each step definition (in the per-step page).

For more information, see:

If you notice any errors or omissions in the step descriptions, or any questionable results, please let us know

by Morgan Price, Arkin group, Lawrence Berkeley National Laboratory