L-proline biosynthesis

Analysis of pathway pro in 276 genomes

Genome	Best path
Acidovorax caeni R-24608	proB, proA, proC
Actinokineospora bangkokensis 44EHW	argJ, argB, argC, argD, OAT, proC
Actinomyces timonensis 7400942	proB, proA, proC
Algiphilus aromaticivorans DG1253	proB, proA, proC
Algoriphagus aquaeductus T4	proB, proA, proC
Algoriphagus machipongonensis PR1	argJ, argB, argC, argD, OAT, proC
Alicyclobacillus ferrooxydans TC-34	argA, argB, argC, argD, argE, OAT, proC
Alishewanella agri BL06	proB, proA, proC
Alistipes indistinctus YIT 12060	proB, proA, proC
Alistipes shahii WAL 8301	proB, proA, proC
Alkalitalea saponilacus SC/BZ-SP2	proB, proA, proC
Amantichitinum ursilacus IGB-41	proB, proA, proC
Amphibacillus jilinensis Y1	proB, proA, proC
Amphritea japonica JAMM 1866	proB, proA, proC
Amycolatopsis halophila YIM 93223	argJ, argB, argC, argD, OAT, proC
Amycolatopsis xylanica CPCC 202699	argJ, argB, argC, argD, OAT, proC
Aquimarina agarilytica ZC1	argA, argB, argC, argD, argE?, OAT, proC
Aquimarina longa SW024	argA, argB, argC, argD, argE?, OAT, proC
Aquimarina macrocephali JAMB N27	argA, argB, argC, argD, argE?, OAT, proC
Archaeoglobus sulfaticallidus PM70-1	argJ, argB, argC, argD, cyclodeaminase
Arcticibacter svalbardensis MN12-7	proB, proA, proC
Ardenticatena maritima 110S	argJ, argB, argC, argD, cyclodeaminase
Arenimonas metalli CF5-1	argA, argB, argC, argD, argE, cyclodeaminase
Arenitalea lutea P7-3-5	proB, proA, proC
Azospirillum humicireducens SgZ-5	argA, argB, argC, argD, argE, cyclodeaminase
Azospirillum thiophilum BV-S	argA, argB, argC, argD, argE, cyclodeaminase
Bacillus altitudinis 41KF2b	argJ, argB, argC, argD, OAT, proC
Bacillus coahuilensis m4-4	proB, proA, proC
Bacillus cytotoxicus NVH 391-98	argJ, argB, argC, argD, OAT, proC
Bacillus horneckiae 1P01SC	argJ, argB, argC, argD, OAT, proC
Bacillus okhensis Kh10-101	argJ, argB, argC, argD, OAT, proC
Bacillus safensis FO-36b	argJ, argB, argC, argD, OAT, proC
Bacillus velezensis CBMB205	argJ, argB, argC, argD, OAT, proC
Bacteroides clarus YIT 12056	proB, proA, proC
Bacteroides faecis MAJ27	proB, proA, proC
Bacteroides fluxus YIT 12057	proB, proA, proC
Bacteroides oleiciplenus YIT 12058	proB, proA, proC
Barnesiella intestinihominis YIT 11860	proB, proA, proC
Belnapia rosea CPCC 100156	proB, proA, proC
Bizionia argentinensis JUB59	proB, proA, proC
Bradyrhizobium diazoefficiens USDA110	proB, proA, proC
Brevibacterium jeotgali SJ5-8	proB, proA, proC
Brucella inopinata BO1	argJ, argB, argC, argD, cyclodeaminase
Brucella microti CCM 4915	argJ, argB, argC, argD, cyclodeaminase
Bryobacter aggregatus MPL3	argJ, argB, argC, argD, OAT, proC
Caldicellulosiruptor hydrothermalis 108	proB, proA, proC
Caldicellulosiruptor kronotskyensis 2002	proB, proA, proC
Carboxydothermus pertinax Ug1	proB, proA, proC
Catellicoccus marimammalium M35/04/3	proB, proA, proC
Chromobacterium vaccinii MWU205	proB, proA, proC
Chryseobacterium angstadtii KM	argJ, argB, argC, argD, OAT, proC
Chryseobacterium arthrosphaerae CC-VM-7	argJ, argB, argC, argD, OAT, proC
Chryseobacterium viscerum 687B-08	argA, argB, argC, argD, argE, OAT, proC
Cloacibacillus porcorum CL-84	lysW, argX, lysZ, lysY, lysJ, lysK, OAT, proC
Cobetia crustatorum JO1	proB, proA, proC
Collimonas arenae Ter10	proB, proA, proC
Collimonas pratensis Ter91	argA, argB, argC, argD, argE, OAT, proC
Collinsella tanakaei YIT 12063	proB, proA, proC
Coprobacter fastidiosus NSB1	proB, proA, proC
Corynebacterium deserti GIMN1.010	proB, proA, proC
Corynebacterium frankenforstense ST18	proB, proA, proC
Corynebacterium lactis RW2-5	proB, proA, proC
Croceitalea dokdonensis DOKDO 023	argA, argB, argC, argD, argE?, OAT, proC
Cronobacter condimenti 1330	proB, proA, proC
Cronobacter muytjensii ATCC 51329	proB, proA, proC
Cronobacter universalis NCTC 9529	proB, proA, proC
Desulfatitalea tepidiphila S28bF	proB, proA, proC
Desulfotomaculum hydrothermale Lam5	proB, proA, proC
Dethiosulfovibrio salsuginis USBA 82	proB, proA, proC
Devosia chinhatensis IPL18	proB, proA, proC
Devriesea agamarum IMP2	argJ, argB, argC, argD, OAT, proC
Dialister succinatiphilus YIT 11850	proB, proA, proC
Dietzia timorensis ID05-A0528	proB, proA, proC
Dokdonella koreensis DS-123	proB, proA, proC
Domibacillus robiginosus WS 4628	argJ, argB, argC, argD, OAT, proC
Duganella sacchari Sac-22	proB, proA, proC
Dyadobacter tibetensis Y620-1	proB, proA, proC
Dyella jiangningensis SBZ3-12	proB, proA, proC
Endozoicomonas montiporae CL-33	proB, proA, proC
Enterococcus termitis LMG 8895	proB, proA, proC
Enterorhabdus caecimuris B7	proB, proA, proC
Epibacterium ulvae U95	argA, argB, argC, argD, argE, cyclodeaminase
Erythrobacter gangjinensis K7-2	proB, proA, proC
Erythrobacter marinus HWDM-33	proB, proA, proC
Ethanoligenens harbinense YUAN-3	argJ, argB, argC, argD, OAT, proC
Fervidicella metallireducens AeB	proB, proA, proC
Fibrella aestuarina BUZ 2	proB, proA, proC
Flammeovirga pacifica WPAGA1	proB, proA, proC
Flaviramulus ichthyoenteri Th78	argA, argB, argC, argD, argE?, OAT, proC
Flavobacterium beibuense F44-8	argA, argB, argC, argD, argE?, OAT, proC
Flavobacterium glycines Gm-149	proB, proA, proC
Flavobacterium sp. LM5	proB, proA, proC
Flavobacterium ummariense DS-12	proB, proA, proC
Frischella perrara PEB0191	proB, proA, proC
Galbibacter marinus ck-I2-15	proB, proA, proC
Gallaecimonas xiamenensis 3-C-1	proB, proA, proC
Geobacter daltonii FRC-32	proB, proA, proC
Gillisia marina CBA3202	proB, proA, proC
Gracilibacillus halophilus YIM-C55.5	proB, proA, proC
Granulicella mallensis MP5ACTX8	argA, argB, argC, argD, argE, OAT, proC
Granulicella tundricola MP5ACTX9	argJ, argB, argC, argD, OAT, proC
Hafnia paralvei ATCC 29927	proB, proA, proC
Haladaptatus cibarius D43	lysW, argX, lysZ, lysY, lysJ, lysK, cyclodeaminase
Halioglobus japonicus S1-36	proB, proA, proC
Halobacillus alkaliphilus FP5	argJ, argB, argC, argD, OAT, proC
Halococcus hamelinensis 100A6	lysW, argX, lysZ, lysY, lysJ, lysK, cyclodeaminase
Halomonas salina B6	proB, proA, proC
Halomonas smyrnensis AAD6	argA, argB, argC, argD, argE, OAT, proC
Halomonas stevensii S18214	proB, proA, proC
Halomonas titanicae BH1	proB, proA, proC
Halomonas xinjiangensis TRM 0175	proB, proA, proC
Halopiger salifodinae KCY07-B2	lysW, argX, lysZ, lysY, lysJ, lysK, OAT, proC
Halostagnicola larsenii XH-48	lysW, argX, lysZ, lysY, lysJ, lysK, cyclodeaminase
Haloterrigena daqingensis JX313	lysW, argX, lysZ, lysY, lysJ, lysK, cyclodeaminase
Herbaspirillum aquaticum IEH 4430	argA, argB, argC, argD, argE, cyclodeaminase
Hippea alviniae EP5-r	proB, proA, proC
Hippea jasoniae Mar08-272r	proB, proA, proC
Hoeflea phototrophica DFL-43	argA, argB, argC, argD, argE, cyclodeaminase
Hyphomicrobium nitrativorans NL23	proB, proA, proC
Imtechella halotolerans K1	argA, argB, argC, argD, argE?, OAT, proC
Indibacter alkaliphilus LW1	argJ, argB, argC, argD, OAT, proC
Jannaschia aquimarina GSW-M26	proB, proA, proC
Jeotgalibacillus soli P9	argJ, argB, argC, argD, OAT, proC
Kangiella geojedonensis YCS-5	proB, proA, proC
Knoellia flava TL1	argJ, argB, argC, argD, OAT, proC
Kocuria flava HO-9041	proB, proA, proC
Kocuria turfanensis HO-9042	argJ, argB, argC, argD, OAT, proC
Laceyella sediminis RHA1	argJ, argB, argC, argD, OAT, proC
Lacinutrix algicola AKS293	argA, argB, argC, argD, argE?, OAT, proC
Lacinutrix himadriensis E4-9a	argA, argB, argC, argD, argE?, OAT, proC
Lacinutrix mariniflava AKS432	argA, argB, argC, argD, argE?, OAT, proC
Lactobacillus curieae CCTCC M 2011381	proB, proA, proC
Lactobacillus delbrueckii ZN7a-9	proB, proA, proC
Lactobacillus hokkaidonensis LOOC260	proB, proA, proC
Lactobacillus oryzae SG293	proB, proA, proC
Lactobacillus pobuzihii E100301	proB, proA, proC
Lactobacillus shenzhenensis LY-73	proB, proA, proC
Lactobacillus silagei IWT126	proB, proA, proC
Leeuwenhoekiella blandensis MED217	proB, proA, proC
Lentibacillus jeotgali Grbi	argJ, argB, argC, argD, OAT, proC
Limnohabitans curvus MWH-C5	proB, proA, proC
Limnohabitans parvus II-B4	argA, argB, argC, argD, argE, cyclodeaminase
Listeria fleischmannii LU2006-1	proB, proA, proC
Luteimonas huabeiensis HB2	proB, proA, proC
Luteipulveratus mongoliensis MN07-A0370	proB, proA, proC
Lutibaculum baratangense AMV1	proB, proA, proC
Lysobacter daejeonensis GH1-9	argA, argB, argC, argD, argE, cyclodeaminase
Magnetovibrio blakemorei MV-1	proB, proA, proC
Marinicella litoralis KMM 3900	proB, proA, proC
Mariniradius saccharolyticus AK6	proB, proA, proC
Marinobacter algicola DG893	proB, proA, proC
Marinobacter guineae M3B	proB, proA, proC
Marinobacter psychrophilus 20041	proB, proA, proC
Marinomonas arctica 328	proB, proA, proC
Marivita geojedonensis DPG-138	argA, argB, argC, argD, argE, cyclodeaminase
Martelella endophytica YC6887	argA, argB, argC, argD, argE, cyclodeaminase
Megamonas funiformis YIT 11815	proB, proA, proC
Mesorhizobium ciceri WSM1271	argA, argB, argC, argD, argE, cyclodeaminase
Methanobacterium arcticum M2	argJ, argB, argC, argD, cyclodeaminase
Methanobacterium veterum MK4	argJ, argB, argC, argD, cyclodeaminase
Methanocella arvoryzae MRE50	argJ, argB, argC, argD, cyclodeaminase
Methanococcus aeolicus Nankai-3	argJ, argB, argC, argD, cyclodeaminase
Methanoculleus horonobensis T10	argJ, argB, argC, argD, cyclodeaminase
Methanolinea tarda NOBI-1	argJ, argB, argC, argD, cyclodeaminase
Methanosarcina soligelidi SMA-21	proB, proA, proC
Methanospirillum lacunae Ki8-1	argJ, argB, argC, argD, cyclodeaminase
Methanospirillum stamsii Pt1	argJ, argB, argC, argD, cyclodeaminase
Methylibium petroleiphilum PM1	argJ, argB, argC, argD, OAT, proC
Methylobacterium gossipiicola Gh-105	proB, proA, proC
Methylocapsa aurea KYG	argA, argB, argC, argD, argE, OAT, proC
Methylotenera versatilis 301	proB, proA, proC
Microbacterium profundi Shh49	argJ, argB, argC, argD, OAT, proC
Microvirga lotononidis WSM3557	argA, argB, argC, argD, argE, OAT, proC
Moritella dasanensis ArB 0140	argA, argB, argC, argD, argE, cyclodeaminase
Mucilaginibacter gossypii Gh-67	proB, proA, proC
Mucilaginibacter gossypiicola Gh-48	proB, proA, proC
Mucilaginibacter mallensis MP1X4	proB, proA, proC
Nafulsella turpanensis ZLM-10	proB, proA, proC
Natronomonas moolapensis 8.8.11	proB, proA, proC
Nautilia profundicola AmH	proB, proA, proC
Neiella marina J221	proB, proA, proC
Neptunomonas antarctica S3-22	proB, proA, proC
Nocardioides daejeonensis MJ31	argJ, argB, argC, argD, OAT, proC
Nocardioides dokdonensis FR1436	argJ, argB, argC, argD, OAT, proC
Nocardiopsis baichengensis YIM 90130	argJ, argB, argC, argD, OAT, proC
Nocardiopsis gilva YIM 90087	argJ, argB, argC, argD, OAT, proC
Novosphingobium barchaimii LL02	proB, proA, proC
Novosphingobium fuchskuhlense FNE08-7	proB, proA, proC
Novosphingobium lindaniclasticum LE124	proB, proA, proC
Oceanisphaera arctica V1-41	proB, proA, proC
Ochrobactrum rhizosphaerae PR17	argJ, argB, argC, argD, cyclodeaminase
Ochrobactrum thiophenivorans DSM 7216	argA, argB, argC, argD, argE, cyclodeaminase
Oscillibacter ruminantium GH1	proB, proA, proC
Paenisporosarcina indica PN2	proB, proA, proC
Palaeococcus pacificus DY20341	proB, proA, proC
Paludibacter propionicigenes WB4	proB, proA, proC
Pandoraea thiooxydans ATSB16	argA, argB, argC, argD, argE, cyclodeaminase
Pantoea rwandensis LMG 26275	proB, proA, proC
Pedobacter arcticus A12	proB, proA, proC
Photobacterium gaetbulicola Gung47	proB, proA, proC
Photobacterium jeanii R-40508	proB, proA, proC
Phyllobacterium brassicacearum STM 196	argA, argB, argC, argD, argE, OAT, proC
Phyllobacterium endophyticum PEPV15	argJ, argB, argC, argD, OAT, proC
Phyllobacterium leguminum ORS 1419	argJ, argB, argC, argD, cyclodeaminase
Planktomarina temperata RCA23	argA, argB, argC, argD, argE, cyclodeaminase
Planococcus halocryophilus Or1	proB, proA, proC
Pleomorphomonas diazotrophica R5-392	argJ, argB, argC, argD, cyclodeaminase
Polaribacter dokdonensis DSW-5	argA, argB, argC, argD, argE?, OAT, proC
Pontibacillus litoralis JSM 072002	proB, proA, proC
Pontibacter lucknowensis DM9	argA, argB, argC, argD, argE, OAT, proC
Pontibacter ramchanderi LP43	argA, argB, argC, argD, argE, OAT, proC
Pontimonas salivibrio CL-TW6	argJ, argB, argC, argD, OAT, proC
Porphyrobacter dokdonensis DSW-74	proB, proA, proC
Pseudoalteromonas arctica A 37-1-2	proB, proA, proC
Pseudomonas baetica a390	proB, proA, proC
Pseudomonas litoralis 2SM5	proB, proA, proC
Pseudomonas taeanensis MS-3	proB, proA, proC
Pseudovibrio axinellae Ad2	argA, argB, argC, argD, argE, cyclodeaminase
Psychrobacter arcticus 273-4	proB, proA, proC
Psychrobacter cryohalolentis K5	argA, argB, argC, argD, argE, cyclodeaminase
Psychromonas ingrahamii 37	proB, proA, proC
Psychromonas ossibalaenae JAMM 0738	argA, argB, argC, argD, argE, cyclodeaminase
Rhizobium freirei PRF 81	argA, argB, argC, argD, argE, cyclodeaminase
Rhizobium grahamii CCGE 502	argJ, argB, argC, argD, OAT, proC
Rhizobium subbaraonis JC85	argJ, argB, argC, argD, OAT, proC
Rhodanobacter denitrificans 2APBS1	argA, argB, argC, argD, argE, OAT, proC
Rhodobacter johrii JA192	proB, proA, proC
Rhodobacter maris JA276	proB, proA, proC
Rhodobacter ovatus JA234	proB, proA, proC
Rhodobacter viridis JA737	proB, proA, proC
Rhodococcus qingshengii djl-6-2	proB, proA, proC
Rhodopseudomonas pseudopalustris DSM 123	proB, proA, proC
Roseateles aquatilis CCUG 48205	proB, proA, proC
Roseivirga spongicola UST030701-084	argA, argB, argC, argD, argE, OAT, proC
Rubrivirga marina SAORIC-28	proB, proA, proC
Ruegeria conchae TW15	argA, argB, argC, argD, argE, cyclodeaminase
Saccharomonospora marina XMU15	argJ, argB, argC, argD, OAT, proC
Salinicoccus carnicancri Crm	proB, proA, proC
Serinicoccus profundi MCCC 1A05965	proB, proA, proC
Shewanella halifaxensis HAW-EB4	proB, proA, proC
Skermanella stibiiresistens SB22	argA, argB, argC, argD, argE, OAT, proC
Snodgrassella alvi wkB2	proB, proA, proC
Sphaerochaeta globosa Buddy	proB, proA, proC
Sphaerochaeta pleomorpha Grapes	proB, proA, proC
Sphingobium baderi LL03	proB, proA, proC
Sphingobium czechense LL01	proB, proA, proC
Sphingobium quisquiliarum P25	proB, proA, proC
Sphingomonas histidinilytica UM2	proB, proA, proC
Sphingomonas indica Dd16	argJ, argB, argC, argD, OAT, proC
Sphingomonas laterariae LNB2	proB, proA, proC
Sphingopyxis indica DS15	proB, proA, proC
Sphingopyxis terrae UI2	proB, proA, proC
Sporolactobacillus vineae SL153	proB, proA, proC
Streptacidiphilus oryzae TH49	argJ, argB, argC, argD, OAT, proC
Streptococcus anginosus CCUG 39159	proB, proA, proC
Streptococcus massiliensis 4401825	proB, proA, proC
Streptococcus oralis 7747	proB, proA, proC
Streptococcus oralis AZ_3a	proB, proA, proC
Streptomyces kebangsaanensis SUK12	argJ, argB, argC, argD, OAT, proC
Succinatimonas hippei YIT 12066	proB, proA, proC
Sulfurimonas gotlandica GD1	proB, proA, proC
Tatumella morbirosei LMG 23360	proB, proA, proC
Thauera humireducens SgZ-1	argJ, argB, argC, argD, OAT, proC
Thermoactinomyces daqus H-18	argJ, argB, argC, argD, OAT, proC
Thermobifida halotolerans YIM 90462	argJ, argB, argC, argD, OAT, proC
Thermodesulfovibrio aggregans TGE-P1	proB, proA, proC
Thermophagus xiamenensis HS1	proB, proA, proC
Thermovenabulum gondwanense R270	proB, proA, proC
Thioclava dalianensis DLFJ1-1	argA, argB, argC, argD, argE, cyclodeaminase
Thiohalospira halophila HL 3	proB, proA, proC
Tistlia consotensis USBA 355	proB, proA, proC
Vagococcus penaei CD276	proB, proA, proC
Verminephrobacter eiseniae EF01-2	proB, proA, proC
Weissella oryzae SG25	proB, proA, proC
Williamsia sterculiae CPCC 203464	argJ, argB, argC, argD, OAT, proC
Yersinia intermedia Y228	proB, proA, proC

Confidence: high confidence medium confidence low confidence
? – known gap: despite the lack of a good candidate for this step, this organism (or a related organism) performs the pathway

This GapMind analysis is from Jul 26 2024. The underlying query database was built on Jul 25 2024.