NP_001273965.1 has 744 amino acids
Query: DUF3504 [M=162]
Accession: PF12012.12
Description: Domain of unknown function (DUF3504)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-44 137.2 0.2 5.2e-44 136.3 0.2 1.4 1 NP_001273965.1
Domain annotation for each sequence (and alignments):
>> NP_001273965.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.3 0.2 5.2e-44 5.2e-44 1 160 [. 560 713 .. 560 715 .. 0.91
Alignments for each domain:
== domain 1 score: 136.3 bits; conditional E-value: 5.2e-44
DUF3504 1 vvsrveEeeLWeskqLgadsPivLLntllyfntkyfnlrtveehlkLsfsnverqskknpreketylrylepekkaeakkrkkeeede.nkvveq 94
++s ++Eee+W++++Lg+dsPi+LL+t++++n++y+n+rt++eh++L+++++e ++++++ y+++++++++++r +++ + +k++
NP_001273965.1 560 YFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQ------PYFARTDSVKRESRSGSTRVChGKIY-- 646
5899*********************************************************......66666555666655555555556777.. PP
DUF3504 95 aensenplrCpvk.LyelylskcPesvkerkdvFYlqpeksvvpesplWyssqplgkesLesmlkri 160
+e+s+ +++Cp++ Ly++++ ++P++++e k+ FYl+++k++++ ++Wy++q++g +sL+ ++ ++
NP_001273965.1 647 HEHSRGHKQCPYClLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNL 713
*************99**********************************************999876 PP
Or compare NP_001273965.1 to CDD or PaperBLAST