Family Search for TIGR00001

Running HMMer for TIGR00001

TIGR00001 hits 80 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

RL35_BACSU / P55874 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Bacillus subtilis (strain 168) (see paper)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 94.3 bits

• subunit: Part of the 50S ribosomal subunit.

RpmI / b1717 50S ribosomal subunit protein L35 from Escherichia coli K-12 substr. MG1655 (see 4 papers)
rpmI / P0A7Q1 50S ribosomal subunit protein L35 from Escherichia coli (strain K12) (see 14 papers)
RL35_ECOLI / P0A7Q1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; Ribosomal protein A from Escherichia coli (strain K12) (see 9 papers)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 90.9 bits

• subunit: Part of the 50S ribosomal subunit.

RK35_SPIOL / P23326 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic; CL35 from Spinacia oleracea (Spinach) (see 2 papers)
Aligns to 90:152 / 159 (39.6%), covers 100.0% of TIGR00001, 88.1 bits

• function: Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.
  subunit: Component of the chloroplast large ribosomal subunit (LSU). Mature 70S chloroplast ribosomes of higher plants consist of a small (30S) and a large (50S) subunit. The 30S small subunit contains 1 molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33 different proteins.

RK35_ARATH / Q8VZ55 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 75:137 / 145 (43.4%), covers 100.0% of TIGR00001, 79.5 bits

• subunit: Part of the 50S ribosomal subunit.
  disruption phenotype: Embryonic lethality. Embryo development arrested at the globular stage.

RL35_THET8 / Q5SKU1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 78.8 bits

• subunit: Part of the 50S ribosomal subunit

RL35_RHOPA / Q6NDR5 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; RRP-L35 from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (see paper)
Aligns to 2:65 / 66 (97.0%), covers 98.4% of TIGR00001, 72.9 bits

RL35_DEIRA / Q9RSW6 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see 6 papers)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 72.1 bits

• function: Binds the 23S rRNA
  subunit: Part of the 50S ribosomal subunit. Contacts proteins L15 and L33.

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