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Family Search for PF02153 (PDH_N)

April 2024: GapMind for amino acid biosynthesis has been updated to include newly-discovered enzymes and comparative genomics predictions (see details)

Running HMMer for PF02153

PF02153 hits 103 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

TYRC_ZYMMO / Q04983 Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see paper)
Aligns to 19:173 / 293 (52.9%), covers 98.7% of PF02153, 189.7 bits

O67636 prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus (see paper)
Aligns to 45:199 / 311 (49.8%), covers 99.4% of PF02153, 189.0 bits

tyrAa / P73906 arogenate dehydrogenase monomer (EC 1.3.1.78) from Synechocystis sp. (strain PCC 6803 / Kazusa) (see paper)
P73906 arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Synechocystis sp. PCC 6803 (see paper)
Aligns to 15:164 / 279 (53.8%), covers 99.4% of PF02153, 179.7 bits

Q81P63 prephenate dehydrogenase (EC 1.3.1.12) from Bacillus anthracis (see paper)
Aligns to 29:184 / 378 (41.3%), covers 99.4% of PF02153, 147.5 bits

Q8DUW0 prephenate dehydrogenase (EC 1.3.1.12) from Streptococcus mutans (see paper)
Aligns to 18:175 / 368 (42.9%), covers 99.4% of PF02153, 120.9 bits

J9XQS6 prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium (see paper)
Aligns to 30:156 / 287 (44.3%), covers 74.0% of PF02153, 100.7 bits

novF / Q9L9G2 prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus (see paper)
Aligns to 16:163 / 362 (40.9%), covers 97.4% of PF02153, 89.2 bits

A0A101IGG2 prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea (see paper)
Aligns to 26:168 / 310 (46.1%), covers 99.4% of PF02153, 87.7 bits

TyrAAT1 / Q944B6 arogenate dehydrogenase (EC 1.3.1.78) from Arabidopsis thaliana (see paper)
TYRA1_ARATH / Q944B6 Arogenate dehydrogenase 1, chloroplastic; TYRATC; TyrAAT1; EC 1.3.1.78 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
Q944B6 arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Arabidopsis thaliana (see 2 papers)
2 alignments in 67:528 / 640 (41.7%), covering up to 72.1% of PF02153, 74.3 bits

Ga0059261_2298 prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) from Sphingomonas koreensis DSMZ 15582
Aligns to 16:149 / 249 (53.8%), covers 83.8% of PF02153, 68.8 bits

TYRA_MYCTU / O69721 Prephenate dehydrogenase; PDH; EC 1.3.1.12 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
Aligns to 22:175 / 323 (47.7%), covers 92.2% of PF02153, 68.3 bits

E1R5M5 arogenate dehydrogenase [NAD(P)+] (EC 1.3.1.79) from Sediminispirochaeta smaragdinae (see paper)
Aligns to 18:156 / 251 (55.4%), covers 98.7% of PF02153, 62.0 bits

DVU0464 prephenate and/or arogenate dehydrogenase from Desulfovibrio vulgaris Hildenborough JW710
Aligns to 20:141 / 255 (47.8%), covers 44.2% of PF02153, 62.0 bits

A8AAX2 prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis (see 2 papers)
Aligns to 111:252 / 348 (40.8%), covers 67.5% of PF02153, 55.4 bits

P43902 prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae (see paper)
Aligns to 117:239 / 377 (32.6%), covers 43.5% of PF02153, 49.9 bits

TyrA / b2600 fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
tyrA / P07023 fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli (strain K12) (see 12 papers)
Aligns to 124:240 / 373 (31.4%), covers 63.6% of PF02153, 47.2 bits

BT3933 prephenate dehydrogenase (EC 1.3.1.13) from Bacteroides thetaiotaomicron VPI-5482
Aligns to 24:151 / 257 (49.8%), covers 68.8% of PF02153, 41.9 bits

O30012 prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus (see paper)
Aligns to 29:138 / 620 (17.7%), covers 48.7% of PF02153, 39.5 bits

TyrAAT2 / Q9LMR3 arogenate dehydrogenase (EC 1.3.1.78) from Arabidopsis thaliana (see paper)
TYRA2_ARATH / Q9LMR3 Arogenate dehydrogenase 2, chloroplastic; TyrAAT2; EC 1.3.1.78 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Q9LMR3 arogenate dehydrogenase (NADP+) (EC 1.3.1.78) from Arabidopsis thaliana (see 2 papers)
Aligns to 73:223 / 358 (42.2%), covers 95.5% of PF02153, 38.3 bits

AroDH-1 / B4FY98 arogenate dehydrogenase 1 (EC 1.3.1.43) from Zea mays (see paper)
Aligns to 96:230 / 360 (37.5%), covers 69.5% of PF02153, 37.9 bits

B6SS03 arogenate dehydrogenase [NAD(P)+] (EC 1.3.1.79) from Zea mays (see paper)
Aligns to 83:197 / 349 (33.0%), covers 68.8% of PF02153, 37.3 bits

G7J2E9 prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Medicago truncatula (see paper)
Aligns to 22:146 / 268 (46.6%), covers 55.2% of PF02153, 35.2 bits

PAPC_STRPR / P72540 4-amino-4-deoxyprephenate dehydrogenase; EC 1.3.1.121 from Streptomyces pristinaespiralis (see paper)
Aligns to 23:165 / 296 (48.3%), covers 62.3% of PF02153, 34.0 bits

Or search for genetic data about PF02153 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory