SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 10356726_29_240 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
31% identity, 75% coverage: 53:212/212 of query aligns to 78:238/240 of 4qhzC

query
sites
4qhzC
K
 
K
T
 
K
K
 
G
N
 
D
I
 
I
F
 
Q
S
 
T
T
 
K
M
 
Q
E
 
K
H
 
F
G
 
N
D
 
D
I
 
F
E
 
Q
A
 
M
H
 
H
I
 
I
E
 
E
F
 
W
M
 
Q
I
 
V
P
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
K
 
S
K
 
R
A
 
G
N
|
N
S
|
S
G
 
G
I
 
I
Y
 
F
F
 
L
M
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
V
 
V
Q
|
Q
V
 
V
Y
 
L
D
 
D
S
 
C
H
 
Y
G
 
-
V
 
-
E
 
N
D
 
N
P
 
P
R
 
T
F
 
Y
Y
 
V
-
 
N
-
 
G
H
 
Q
C
 
T
G
 
G
G
 
S
I
 
I
Y
 
Y
E
 
K
R
 
Q
H
 
-
K
 
-
W
 
-
P
 
-
E
 
-
N
 
-
Y
 
-
G
 
-
F
 
-
E
 
-
G
 
-
T
 
S
A
 
I
P
 
P
R
 
L
V
 
A
N
 
N
A
 
A
A
 
M
L
 
R
P
 
K
A
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
H
 
D
I
 
I
I
 
I
F
 
Y
H
 
T
A
 
A
P
 
P
R
 
T
F
 
F
D
 
K
Q
 
E
E
 
D
G
 
G
N
 
S
K
 
-
I
 
Y
K
 
R
N
 
T
A
 
H
V
 
P
F
 
T
V
 
V
K
 
T
V
 
V
V
 
I
H
 
Q
N
 
N
G
 
G
T
 
V
V
 
V
I
 
L
H
 
Q
E
 
N
N
 
H
Q
 
T
E
 
T
V
 
I
T
 
L
G
 
G
P
 
T
T
 
T
R
 
E
A
 
W
A
 
I
G
 
G
F
 
F
G
 
P
D
 
Q
E
 
V
K
 
K
P
 
K
-
 
H
-
 
G
L
 
A
G
 
G
P
 
P
L
 
I
M
 
I
I
 
L
Q
|
Q
G
 
-
D
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
-
 
E
P
 
P
V
 
I
A
 
S
Y
 
F
R
 
R
S
 
N
I
 
I
R
 
W
I
 
I
K
 
R

Query Sequence

>10356726_29_240
EWIELINDSGLSSFRAPLGDWNTASDAKLDPSNEQQLKTNAGAGLITNGSPGKTKNIFST
MEHGDIEAHIEFMIPKKANSGIYFMGRYEVQVYDSHGVEDPRFYHCGGIYERHKWPENYG
FEGTAPRVNAALPAGEWQTYHIIFHAPRFDQEGNKIKNAVFVKVVHNGTVIHENQEVTGP
TRAAGFGDEKPLGPLMIQGDHGPVAYRSIRIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory