Comparing 18145 FitnessBrowser__Keio:18145 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
2vycA Crystal structure of acid induced arginine decarboxylase from e. Coli (see paper)
100% identity, 100% coverage: 1:755/755 of query aligns to 1:755/755 of 2vycA
P28629 Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12) (see paper)
100% identity, 100% coverage: 1:755/755 of query aligns to 1:755/755 of P28629
5xx1G Crystal structure of arginine decarboxylase (adia) from salmonella typhimurium (see paper)
90% identity, 100% coverage: 1:755/755 of query aligns to 2:735/735 of 5xx1G
6q6iA Lysine decarboxylase a from pseudomonas aeruginosa
40% identity, 100% coverage: 3:754/755 of query aligns to 8:749/749 of 6q6iA
6q7lA Inducible lysine decarboxylase (see paper)
36% identity, 97% coverage: 21:754/755 of query aligns to 19:710/711 of 6q7lA
3n75A X-ray crystal structure of the escherichia coli inducible lysine decarboxylase ldci (see paper)
36% identity, 97% coverage: 21:754/755 of query aligns to 19:710/711 of 3n75A
1c4kA Ornithine decarboxylase mutant (gly121tyr) (see paper)
30% identity, 87% coverage: 86:741/755 of query aligns to 56:699/728 of 1c4kA
1ordA Crystallographic structure of a plp-dependent ornithine decarboxylase from lactobacillus 30a to 3.1 angstroms resolution (see paper)
30% identity, 87% coverage: 86:741/755 of query aligns to 56:701/730 of 1ordA
>18145 FitnessBrowser__Keio:18145
MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFS
YQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTA
DFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDY
YGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA
CMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKIS
ESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY
ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHAT
TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWN
KEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILA
PGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS
FKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPV
AEVTPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSY
LRSLQSWDHHFPGFEHETEGTEIIDGIYHVMCVKA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory