Comparing 201602 FitnessBrowser__MR1:201602 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
Q39232 Sucrose transport protein SUC1; AtSUC1; Sucrose permease 1; Sucrose-proton symporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
27% identity, 38% coverage: 43:244/529 of query aligns to 42:266/513 of Q39232
>201602 FitnessBrowser__MR1:201602
MSADHTVTQLDSFSATTHSHATHSVQPELNFWQIFNMCFGFLGIQFGFALQNANVSRIFQ
TLGASIDEIPILWIAAPLTGLLVQPIIGYLSDNTWGCLGRRRPYFLIGAILTTLAIFVMP
HSPTLWIAAGMLWIMDASINIAMEPFRAFVGDNLPPSQRTQGYAMQSFFIGIGAVVASAL
PYILSNFFNVANTAPAGEIADSVRYAFYFGGTVLFLAVTWTVISTKEYSPEELAAFHAKT
KTDVEEQCKRSRTHKDYQFASFVWMGLGALLTFTVWAQDLDKQLYILSIGIFAFGPLQLY
CALRLSQSQPSQRAQLGMVFNVVDDLFHMPKAMHQLAIVQFFSWFALFAMWIYTTSAVTS
YHFGSSDVLSQAYNDGADWVGVLFASYNGFSAIAALFIPLLAKRIGIKLTHTFNMFCGGF
GLISFYFIKDPNLLWLAMIGVGIAWASILSIPYAILSGTLPPKKMGVYMGIFNFFIVIPQ
LLAASVLGLILNGLFDGQPIYALITGGVFMLCAGIAVLFVEQPKALTPH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory