SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 349957 FitnessBrowser__Btheta:349957 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
26% identity, 99% coverage: 2:194/194 of query aligns to 2:184/572 of 6n2oC

query
sites
6n2oC
K
 
K
K
 
K
D
 
D
I
 
L
I
 
I
L
 
I
-
 
R
-
 
V
S
 
A
G
 
G
V
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
I
|
I
L
x
I
S
|
S
I
 
S
A
 
G
T
 
D
V
 
F
I
 
I
G
 
A
K
 
A
A
 
A
A
 
C
L
 
A
K
 
R
E
 
A
G
 
G
L
 
L
Y
 
E
M
 
V
K
 
Y
Q
 
T
A
 
F
E
 
K
V
 
T
H
x
F
G
 
P
M
x
A
S
x
E
Q
x
I
R
 
K
G
 
G
G
 
G
D
 
Y
V
 
A
Q
 
M
S
 
Y
N
 
Q
L
 
V
R
 
R
I
 
A
S
 
S
D
 
S
K
 
E
P
 
K
I
 
L
A
 
Y
S
 
C
D
 
-
L
 
-
I
 
-
P
 
-
S
 
-
G
 
-
K
 
Q
C
 
G
D
 
D
L
 
T
I
 
F
I
 
D
S
 
V
L
 
F
E
 
C
P
 
A
M
 
F
E
 
N
G
 
G
L
 
E
R
 
A
Y
 
Y
L
 
-
P
 
-
Y
 
-
L
 
-
S
 
E
P
 
Q
E
 
N
G
 
K
W
 
D
L
 
K
V
 
I
T
 
K
N
 
P
E
 
G
T
 
T
P
 
A
F
 
F
V
 
V
N
 
Y
I
 
-
P
 
-
N
 
D
Y
 
Y
P
 
P
E
 
G
E
 
G
D
 
D
K
 
F
V
 
E
M
 
P
A
 
D
E
 
E
I
 
I
N
 
P
K
 
E
L
 
G
P
 
V
H
 
F
K
 
A
I
 
Y
V
 
P
L
 
I
N
 
P
V
 
M
D
 
S
K
 
Q
V
 
T
A
 
A
K
 
K
E
 
E
V
 
M
G
 
K
S
 
S
A
 
Y
R
|
R
V
 
S
A
 
K
N
|
N
I
 
M
V
 
V
L
 
A
L
 
L
G
 
G
A
 
A
T
 
L
I
 
S
P
 
E
F
 
L
L
 
F
G
 
N
I
 
I
D
 
S
Y
 
E
E
 
N
K
 
T
V
 
L
Q
 
K
D
 
E
S
 
V
I
 
L
R
 
S
E
 
D
I
 
K
F
|
F
L
 
G
R
 
K
K
 
K
G
 
G
E
 
E
A
 
E
I
 
V
V
 
L
E
 
A
M
 
F
N
|
N
L
 
L
K
 
E
A
 
A
L
 
F
A
 
D
A
 
K
G
 
G
K
 
K
E
 
A
I
 
L
A
 
A
E
 
K
K
 
A
L
 
L
M
 
T
Q
 
K

Sites not aligning to the query:

6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
26% identity, 99% coverage: 2:194/194 of query aligns to 2:184/572 of 6n2oA

query
sites
6n2oA
K
 
K
K
 
K
D
 
D
I
 
L
I
 
I
L
 
I
-
 
R
-
 
V
S
 
A
G
 
G
V
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
I
 
I
L
 
I
S
|
S
I
 
S
A
 
G
T
 
D
V
 
F
I
 
I
G
 
A
K
 
A
A
 
A
A
 
C
L
 
A
K
 
R
E
 
A
G
 
G
L
 
L
Y
 
E
M
 
V
K
 
Y
Q
 
T
A
 
F
E
 
K
V
 
T
H
 
F
G
 
P
M
 
A
S
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
D
 
Y
V
 
A
Q
 
M
S
 
Y
N
 
Q
L
 
V
R
 
R
I
 
A
S
 
S
D
 
S
K
 
E
P
 
K
I
 
L
A
 
Y
S
 
C
D
 
-
L
 
-
I
 
-
P
 
-
S
 
-
G
 
-
K
 
Q
C
 
G
D
 
D
L
 
T
I
 
F
I
 
D
S
 
V
L
 
F
E
 
C
P
 
A
M
 
F
E
 
N
G
 
G
L
 
E
R
 
A
Y
 
Y
L
 
-
P
 
-
Y
 
-
L
 
-
S
 
E
P
 
Q
E
 
N
G
 
K
W
 
D
L
 
K
V
 
I
T
 
K
N
 
P
E
 
G
T
 
T
P
 
A
F
 
F
V
 
V
N
 
Y
I
 
-
P
 
-
N
 
D
Y
 
Y
P
 
P
E
 
G
E
 
G
D
 
D
K
 
F
V
 
E
M
 
P
A
 
D
E
 
E
I
 
I
N
 
P
K
 
E
L
 
G
P
 
V
H
 
F
K
 
A
I
 
Y
V
 
P
L
 
I
N
 
P
V
 
M
D
 
S
K
 
Q
V
 
T
A
 
A
K
 
K
E
 
E
V
 
M
G
 
K
S
 
S
A
 
Y
R
 
R
V
 
S
A
 
K
N
|
N
I
 
M
V
 
V
L
 
A
L
 
L
G
 
G
A
 
A
T
 
L
I
 
S
P
 
E
F
 
L
L
 
F
G
 
N
I
 
I
D
 
S
Y
 
E
E
 
N
K
 
T
V
 
L
Q
 
K
D
 
E
S
 
V
I
 
L
R
 
S
E
 
D
I
x
K
F
 
F
L
 
G
R
 
K
K
 
K
G
 
G
E
 
E
A
 
E
I
 
V
V
 
L
E
 
A
M
 
F
N
 
N
L
 
L
K
 
E
A
 
A
L
 
F
A
 
D
A
 
K
G
 
G
K
 
K
E
 
A
I
 
L
A
 
A
E
 
K
K
 
A
L
 
L
M
 
T
Q
 
K

Sites not aligning to the query:

6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
26% identity, 99% coverage: 2:194/194 of query aligns to 2:184/572 of 6n2nA

query
sites
6n2nA
K
 
K
K
 
K
D
 
D
I
 
L
I
 
I
L
 
I
-
 
R
-
 
V
S
 
A
G
 
G
V
 
E
G
 
G
G
 
G
Q
 
E
G
 
G
I
 
I
L
 
I
S
 
S
I
 
S
A
 
G
T
 
D
V
 
F
I
 
I
G
 
A
K
 
A
A
 
A
A
 
C
L
 
A
K
 
R
E
 
A
G
 
G
L
 
L
Y
 
E
M
 
V
K
 
Y
Q
 
T
A
 
F
E
 
K
V
 
T
H
 
F
G
 
P
M
 
A
S
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
D
 
Y
V
 
A
Q
 
M
S
 
Y
N
 
Q
L
 
V
R
 
R
I
 
A
S
 
S
D
 
S
K
 
E
P
 
K
I
 
L
A
 
Y
S
 
C
D
 
-
L
 
-
I
 
-
P
 
-
S
 
-
G
 
-
K
 
Q
C
 
G
D
 
D
L
 
T
I
 
F
I
 
D
S
 
V
L
 
F
E
 
C
P
 
A
M
 
F
E
 
N
G
 
G
L
 
E
R
 
A
Y
 
Y
L
 
-
P
 
-
Y
 
-
L
 
-
S
 
E
P
 
Q
E
 
N
G
 
K
W
 
D
L
 
K
V
 
I
T
 
K
N
 
P
E
 
G
T
 
T
P
 
A
F
 
F
V
 
V
N
 
Y
I
 
-
P
 
-
N
 
D
Y
 
Y
P
 
P
E
 
G
E
 
G
D
 
D
K
 
F
V
 
E
M
 
P
A
 
D
E
 
E
I
 
I
N
 
P
K
 
E
L
 
G
P
 
V
H
 
F
K
 
A
I
 
Y
V
 
P
L
 
I
N
 
P
V
 
M
D
 
S
K
 
Q
V
 
T
A
 
A
K
 
K
E
 
E
V
 
M
G
 
K
S
 
S
A
 
Y
R
 
R
V
 
S
A
 
K
N
 
N
I
 
M
V
 
V
L
 
A
L
 
L
G
 
G
A
 
A
T
 
L
I
 
S
P
 
E
F
 
L
L
 
F
G
 
N
I
 
I
D
 
S
Y
 
E
E
 
N
K
 
T
V
 
L
Q
 
K
D
 
E
S
 
V
I
 
L
R
 
S
E
 
D
I
 
K
F
 
F
L
 
G
R
 
K
K
 
K
G
 
G
E
 
E
A
 
E
I
 
V
V
 
L
E
 
A
M
 
F
N
 
N
L
 
L
K
 
E
A
 
A
L
 
F
A
 
D
A
 
K
G
 
G
K
 
K
E
 
A
I
 
L
A
 
A
E
 
K
K
 
A
L
 
L
M
 
T
Q
 
K

Sites not aligning to the query:

Query Sequence

>349957 FitnessBrowser__Btheta:349957
MKKDIILSGVGGQGILSIATVIGKAALKEGLYMKQAEVHGMSQRGGDVQSNLRISDKPIA
SDLIPSGKCDLIISLEPMEGLRYLPYLSPEGWLVTNETPFVNIPNYPEEDKVMAEINKLP
HKIVLNVDKVAKEVGSARVANIVLLGATIPFLGIDYEKVQDSIREIFLRKGEAIVEMNLK
ALAAGKEIAEKLMQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory