SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 3606703 FitnessBrowser__Dino:3606703 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 6 hits to proteins with known functional sites (download)

1f93A Crystal structure of a complex between the dimerization domain of hnf-1 alpha and the coactivator dcoh (see paper)
55% identity, 99% coverage: 2:97/97 of query aligns to 4:99/103 of 1f93A

query
sites
1f93A
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P61459 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Rattus norvegicus (Rat) (see 2 papers)
55% identity, 99% coverage: 2:97/97 of query aligns to 5:100/104 of P61459

query
sites
P61459
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A

Sites not aligning to the query:

P61457 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Homo sapiens (Human) (see 6 papers)
55% identity, 99% coverage: 2:97/97 of query aligns to 5:100/104 of P61457

query
sites
P61457
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Sites not aligning to the query:

1dcpA Dcoh, a bifunctional protein-binding transcriptional coactivator, complexed with biopterin (see paper)
55% identity, 98% coverage: 3:97/97 of query aligns to 1:95/99 of 1dcpA

query
sites
1dcpA
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2v6tB Crystal structure of a complex of pterin-4a-carbinolamine dehydratase from toxoplasma gondii with 7,8-dihydrobiopterin (see paper)
53% identity, 78% coverage: 22:97/97 of query aligns to 21:96/100 of 2v6tB

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sites
2v6tB
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A

Q02I31 Putative pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
33% identity, 90% coverage: 11:97/97 of query aligns to 21:111/118 of Q02I31

query
sites
Q02I31
D
 
D
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R
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A

Sites not aligning to the query:

Query Sequence

>3606703 FitnessBrowser__Dino:3606703
MAQKLDDSTRDEHLAPLMRAGWEMVEGRDAIKKTFVFGDFTEAFAFMTGTALWAEKWDHH
PEWSNVYKTVEVTLTTHDVGGLSELDIKLASKMDNLA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory