SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5208944 FitnessBrowser__PV4:5208944 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
28% identity, 38% coverage: 4:83/212 of query aligns to 2:81/612 of 8y4wA

query
sites
8y4wA
R
 
K
F
 
V
F
 
F
S
 
N
H
 
K
I
 
L
E
 
E
E
 
E
V
 
W
V
 
L
L
 
G
N
 
G
A
 
S
L
 
L
I
 
F
T
 
I
A
 
G
M
 
M
T
 
F
L
 
V
L
 
I
V
 
L
F
 
V
V
 
M
E
 
Q
V
 
I
I
 
F
A
 
S
R
 
R
F
 
Q
F
 
I
F
 
F
N
 
N
T
 
S
G
 
P
F
 
L
L
 
I
W
 
W
I
 
S
Q
 
E
E
 
E
L
 
L
T
 
S
L
 
R
T
 
L
I
 
I
C
 
F
G
 
V
W
 
Y
F
 
V
V
 
G
L
 
L
F
 
L
G
 
G
M
 
V
S
 
S
Y
 
M
G
 
G
V
 
I
K
 
R
V
 
S
G
 
Q
A
 
Q
H
 
H
I
 
I
G
 
M
V
 
I
D
 
D
A
 
F
F
 
L
V
 
Y
K
 
A
K
 
K
L
 
F
P
 
P
A
 
K
Q
 
S
G
 
M
R
 
Q
K
 
K

Sites not aligning to the query:

Query Sequence

>5208944 FitnessBrowser__PV4:5208944
MMSRFFSHIEEVVLNALITAMTLLVFVEVIARFFFNTGFLWIQELTLTICGWFVLFGMSY
GVKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLIYCGMFLVGSWDYLAKMYQIGVPMED
IDLPHFLIGGLDGDFAWEYLRIDVEEPAVPLWTSQSILLIGFILLTWRFLQLALAIITNK
TDGFAFADEAKESMHLIDQEAQADDKQPGDKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory