SitesBLAST – Find functional sites

 

SitesBLAST

Comparing ABID97_RS24730 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

5ds9B Crystal structure of fis bound to 27bp DNA f1-8a (aaattagtttgaattttgagctaattt) (see paper)
42% identity, 97% coverage: 1:76/78 of query aligns to 22:97/98 of 5ds9B

query
sites
5ds9B
M
 
V
S
 
T
K
 
Q
K
 
K
H
 
P
I
 
L
E
 
R
D
 
D
C
 
S
V
 
V
R
 
K
T
 
Q
S
 
A
L
 
L
D
 
K
S
 
N
Y
 
Y
F
 
F
R
 
A
D
 
Q
L
 
L
R
 
N
G
 
G
T
 
Q
E
 
D
P
 
V
D
 
N
G
 
D
M
 
L
Y
 
Y
E
 
E
M
 
L
L
 
V
V
 
L
R
 
A
V
 
E
V
 
V
E
 
E
K
 
Q
P
 
P
L
 
L
L
 
L
D
 
D
V
 
M
V
 
V
M
 
M
T
 
Q
R
 
Y
A
 
T
E
 
R
G
 
G
N
|
N
Q
|
Q
S
x
T
K
 
R
A
 
A
A
 
A
Q
 
L
W
 
M
L
 
M
G
 
G
L
 
I
N
|
N
R
|
R
N
 
G
T
|
T
L
 
L
R
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R
K
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K
K
 
K
L
 
L
V
 
K
E
 
K
H
 
Y
K
 
G
L
 
M

1fipA The structure of fis mutant pro61ala illustrates that the kink within the long alpha-helix is not due to the presence of the proline residue (see paper)
42% identity, 91% coverage: 6:76/78 of query aligns to 2:72/73 of 1fipA

query
sites
1fipA
I
x
L
E
 
R
D
 
D
C
 
S
V
 
V
R
 
K
T
 
Q
S
x
A
L
 
L
D
 
K
S
x
N
Y
|
Y
F
 
F
R
 
A
D
 
Q
L
 
L
R
 
N
G
 
G
T
 
Q
E
 
D
P
 
V
D
 
N
G
 
D
M
 
L
Y
 
Y
E
 
E
M
x
L
L
 
V
V
 
L
R
 
A
V
 
E
V
 
V
E
 
E
K
 
Q
P
 
A
L
 
L
L
 
L
D
 
D
V
 
M
V
 
V
M
 
M
T
 
Q
R
 
Y
A
 
T
E
 
R
G
 
G
N
 
N
Q
 
Q
S
 
T
K
 
R
A
 
A
A
 
A
Q
 
L
W
 
M
L
 
M
G
 
G
L
 
I
N
 
N
R
 
R
N
 
G
T
 
T
L
 
L
R
 
R
K
 
K
K
 
K
L
 
L
V
 
K
E
 
K
H
 
Y
K
 
G
L
 
M

Sites not aligning to the query:

P10577 DNA-binding transcriptional regulator NtrC; Nitrogen regulation protein NR(I); Nitrogen regulator I; NRI from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
42% identity, 87% coverage: 6:73/78 of query aligns to 404:472/484 of P10577

query
sites
P10577
I
 
I
E
 
S
D
 
Q
C
 
A
V
 
V
R
 
E
T
 
E
S
 
N
L
 
M
D
 
R
S
 
Q
Y
 
Y
F
 
F
R
 
A
D
 
S
L
 
F
-
 
G
R
 
D
G
 
A
T
 
L
E
 
P
P
 
P
D
 
S
G
 
G
M
 
L
Y
 
Y
E
 
D
M
 
R
L
 
V
V
 
L
R
 
A
V
 
E
V
 
M
E
 
E
K
 
Y
P
 
P
L
 
L
L
 
I
D
 
L
V
 
A
V
 
A
M
 
L
T
 
T
R
 
A
A
 
T
E
 
R
G
 
G
N
 
N
Q
 
Q
S
 
I
K
 
K
A
 
A
A
 
A
Q
 
D
W
 
L
L
 
L
G
 
G
L
 
L
N
 
N
R
 
R
N
|
N
T
 
T
L
 
L
R
 
R
K
 
K
K
 
K
L
 
I
V
 
R
E
 
E

Query Sequence

>ABID97_RS24730
MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWL
GLNRNTLRKKLVEHKLLK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory