Comparing AO356_05200 FitnessBrowser__pseudo5_N2C3_1:AO356_05200 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P32140 Sulfoquinovose isomerase; SQ isomerase; Sulfoquinovose-sulfofructose isomerase; SQ-SF isomerase; EC 5.3.1.31 from Escherichia coli (strain K12) (see paper)
46% identity, 96% coverage: 10:411/419 of query aligns to 2:404/413 of P32140
7ag4D Crystal structure of active site mutant of sq isomerase (yihs-h248a) from salmonella enterica in complex with sulfofructose (sf) (see paper)
45% identity, 96% coverage: 10:411/419 of query aligns to 14:416/425 of 7ag4D
2zblA Functional annotation of salmonella enterica yihs-encoded protein (see paper)
45% identity, 96% coverage: 10:411/419 of query aligns to 2:404/416 of 2zblA
8h1lB Crystal structure of glucose-2-epimerase in complex with d-glucitol from runella slithyformis runsl_4512 (see paper)
24% identity, 53% coverage: 43:265/419 of query aligns to 40:283/423 of 8h1lB
Sites not aligning to the query:
>AO356_05200 FitnessBrowser__pseudo5_N2C3_1:AO356_05200
MDTFQPAFSSWLNAPAHQQWLAAEGLRLLAFAKASKLPDGFGNLDELGRLPADARAETMN
TARMTHSFAMAHIQGLPGFAELVDHGIQALNGRLRDAEHGGWFATTRPDEDGAGKAAYLH
AFVALAASSAVVAQRPGAAALLDEAVRIIDEHFWCEEEGALRESFNRDWSEEEAYRGANS
NMHATEAFLALADATDDPRWLVRALRIVERVIHGHAAANDYLVVEHFDRHWQPLHEYNQD
NPADGFRPYGTTPGHGFEWARLLLHLEAARVQIGMLTPGWLAQDAQKLFDQNCRHGWDVD
GAPGIVYTLDWDNRAVVRHRLHWVHAEAAAAASALLKRTDEAKYEAWYRCFWEFCDKHFI
DRCNGSWHHELDPQNRPSADIWPGKPDLYHAWQAVLIPRLPLAPSMASALARLSSPAPV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory