SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS00190 FitnessBrowser__azobra:AZOBR_RS00190 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
26% identity, 29% coverage: 727:1202/1618 of query aligns to 465:906/1042 of Q54VI3

query
sites
Q54VI3
Q
 
Q
N
 
H
D
 
G
P
 
S
G
 
E
L
 
I
A
 
L
A
 
A
E
 
S
I
 
I
E
 
K
R
 
K
A
 
T
L
 
-
D
 
-
G
 
-
V
 
V
K
 
N
N
 
N
L
 
E
D
 
L
E
 
D
D
 
S
R
 
Q
I
 
I
L
 
F
R
 
S
R
 
A
F
 
I
L
 
L
N
 
S
L
 
F
L
 
N
C
 
R
N
 
H
T
 
L
L
 
L
R
 
K
T
 
T
N
 
N
A
 
F
Y
 
Y
Q
 
K
N
 
-
G
 
-
A
 
-
D
 
-
G
 
-
R
 
Q
P
 
T
K
 
K
T
 
T
Y
 
A
L
 
L
S
 
S
F
 
F
K
 
R
I
 
L
D
 
D
S
 
P
R
 
G
N
 
F
I
 
L
D
 
S
D
 
T
L
 
K
P
 
E
-
 
Y
L
 
V
P
 
S
R
 
T
P
 
P
M
 
Y
V
 
A
E
 
V
V
 
F
F
 
F
V
 
V
Y
 
V
S
 
G
P
 
S
R
 
E
M
 
F
E
 
R
G
 
G
V
 
F
H
 
H
L
 
I
R
 
R
G
 
F
G
 
R
K
 
D
V
 
I
A
 
S
R
 
R
G
 
G
G
 
G
I
 
I
R
 
R
-
 
I
-
 
I
-
 
R
-
 
S
-
 
G
-
 
N
-
 
S
-
 
T
-
 
Q
W
 
Y
S
 
D
D
 
H
R
 
N
R
 
S
E
 
S
D
 
S
F
 
L
R
 
F
T
 
D
E
 
E
I
 
N
L
 
Y
G
 
N
L
 
L
M
 
A
K
 
N
A
 
T
Q
 
Q
M
 
Q
V
 
S
K
 
K
N
 
N
T
 
K
V
 
D
I
 
I
V
 
A
P
 
E
V
 
G
G
 
G
S
 
S
K
 
K
G
 
G
G
 
T
F
 
I
V
 
L
V
 
L
K
 
-
R
 
-
P
 
-
P
 
-
P
 
-
P
 
-
S
 
S
A
 
A
G
 
D
R
 
H
E
 
Q
A
 
S
Q
 
K
L
 
A
A
 
E
E
 
V
G
 
A
I
 
F
E
 
H
C
 
K
Y
 
Y
K
 
-
T
 
-
L
 
-
M
 
I
R
 
D
G
 
G
L
 
L
L
 
L
D
 
D
I
 
L
T
 
-
D
 
-
N
 
-
L
 
-
D
 
-
A
 
-
Q
 
-
G
 
-
A
 
-
V
 
L
V
 
L
P
 
P
P
 
N
P
 
H
E
 
E
V
 
I
V
 
V
R
 
D
H
 
H
D
 
F
G
 
A
D
 
K
D
 
P
P
 
E
Y
 
I
L
 
L
V
 
F
V
 
L
A
 
G
A
 
P
D
 
D
K
 
E
G
 
G
T
 
T
A
 
A
T
 
D
F
 
F
S
 
M
D
 
N
I
 
W
A
 
A
N
 
S
S
 
S
V
 
H
S
 
A
V
 
K
D
 
D
H
 
R
G
 
G
F
 
A
W
 
H
L
 
F
G
 
W
D
 
K
A
 
A
F
 
F
A
 
T
S
 
T
G
 
G
G
 
K
S
 
S
-
 
L
-
 
S
-
 
R
A
 
G
G
 
G
Y
 
I
D
 
P
H
 
H
K
 
D
K
 
L
M
 
Y
G
 
G
I
 
M
T
 
T
A
 
T
R
 
R
G
 
S
A
 
I
W
 
H
E
 
Q
S
 
Y
V
 
V
K
 
L
R
 
G
H
 
T
F
 
L
R
 
A
E
 
K
L
 
L
G
 
G
H
 
R
D
 
N
T
 
-
Q
 
-
T
 
E
Q
 
A
D
 
D
F
 
C
T
 
T
V
 
K
V
 
F
G
 
Q
V
 
T
G
 
G
D
 
G
M
 
P
S
 
D
G
 
G
D
 
D
V
 
L
F
 
G
G
 
S
N
 
N
G
 
E
M
 
I
L
 
K
L
 
I
S
 
S
K
 
K
H
 
D
I
 
-
R
 
K
L
 
T
L
 
I
A
 
G
A
 
I
F
 
V
D
 
D
H
 
G
R
 
S
H
 
G
I
 
V
F
 
L
I
 
L
D
 
D
P
 
P
D
 
Q
P
 
-
D
 
-
A
 
-
A
 
G
R
 
L
S
 
N
W
 
R
E
 
D
E
 
E
R
 
I
Q
 
G
R
 
R
L
 
L
F
 
A
D
 
S
L
 
-
P
 
K
R
|
R
S
 
Q
S
 
M
W
 
A
A
 
R
D
 
Y
Y
 
F
D
 
D
A
 
K
S
 
S
L
 
K
L
 
L
S
 
S
A
 
P
G
 
Q
G
 
G
R
 
F
V
 
F
F
 
V
D
 
D
R
 
V
S
 
A
A
 
E
K
 
N
S
 
D
L
 
V
E
 
K
L
 
L
-
 
P
T
 
N
P
 
G
E
 
D
I
 
I
R
 
V
Q
 
E
R
 
S
F
 
G
G
 
L
I
 
I
A
 
F
K
 
R
D
 
N
-
 
N
-
 
F
H
 
H
V
 
L
T
 
N
P
 
P
L
 
L
E
 
-
L
 
-
M
 
-
Q
 
-
T
 
-
L
 
-
L
 
-
K
 
-
A
 
C
E
 
N
V
 
A
D
 
D
L
 
I
L
 
-
W
 
-
F
 
F
G
 
V
G
 
P
I
 
C
G
 
G
T
 
G
Y
 
R
L
 
P
K
 
E
A
 
S
A
 
V
E
 
Q
E
 
L
T
 
T
N
 
N
A
 
V
E
 
-
V
 
-
G
 
-
D
 
-
K
 
-
A
 
-
N
 
-
D
 
D
A
 
K
L
 
M
R
 
F
I
 
T
D
 
A
G
 
T
R
 
G
D
 
E
V
 
S
R
 
R
A
 
F
K
 
P
V
 
I
I
 
I
G
 
V
E
 
E
G
 
G
A
 
A
N
 
N
L
 
L
G
 
F
V
 
F
T
 
T
Q
 
Q
R
 
K
G
 
A
R
 
R
I
 
L
E
 
M
A
 
I
A
 
E
Q
 
E
H
 
K
G
 
G
V
 
A
R
 
I
L
 
I
N
 
F
T
 
K
D
 
D
A
 
A
I
 
S
D
 
A
N
 
N
S
 
K
A
 
G
G
 
G
V
 
V
D
 
T
T
 
S
S
 
S
D
 
S
H
 
L
E
 
E
V
 
V
N
 
L
I
 
A
K
 
A
I
 
L
L
 
A
L
 
L
N
 
N
D
 
D
V
 
E
V
 
E
V
 
F
R
 
D
G
 
R
D
 
H
M
 
M
T
 
C
L
 
V
K
 
K

Query Sequence

>AZOBR_RS00190 FitnessBrowser__azobra:AZOBR_RS00190
MALRAEQLKDELTEEVVRQVRERLGRSRAAPAERFVRQFYDNVPPDDIIQAPAEQLYGAA
LAMWQWGQQREATDRAKVRVYNPRVEEHGWQSHRTVVEIVNDDMPFLVDSVTAELNRQGL
TVHLVIHPVVRVKRDADGQLAELYEPAAAPTDAAPESFMHVEVGAVTGAAALDQAREGLE
RVLADVRAAVADWRAMRQQVRAAIVEADCARAAVPAIIPDDEVDEAKAFLSWADDDHFTF
LGYREYRFESGADGADSSLGLVAGSGLGILRDDSVTVFDGLRNYATLPPDVRDFLRNPRV
LMVTKGNRPSPVHRAVPMDAFLIKRFDAEGRIIGERLVAGLFTSVAYNRSPREIPYLRRK
VAEVMELAGFDPQGHDGKALLHILETYPRDELFQIQVPELLDIAVGILHLQERQRLALFV
RKDPFERFASCLVYVPRDRYDTTLRRRIQSILEAAYDGTCTGFTTQLTESVLARLHFIIR
TEPGRVPTVDATDLEARLVQASRGWDDHLRDALVEAHGEEQGRTLFRRYADAFPTAYREE
FNAEAAVFDIERIEKATAQGTLGINLYRPLEAEGDELHVKIYHEGRPVPLSDVLPMLEHM
DLKVITEAPFEIAIAGHAAPVWIHDFTARSQNGLPIDCAMVKEKFQDAFAAVWDGRMEDD
GFNRLVLRAGLTAREVTVLRAYAKYLRQARIPYGQDVVESTLAGHPAIARKLVALFHSRF
DPARRSQNDPGLAAEIERALDGVKNLDEDRILRRFLNLLCNTLRTNAYQNGADGRPKTYL
SFKIDSRNIDDLPLPRPMVEVFVYSPRMEGVHLRGGKVARGGIRWSDRREDFRTEILGLM
KAQMVKNTVIVPVGSKGGFVVKRPPPPSAGREAQLAEGIECYKTLMRGLLDITDNLDAQG
AVVPPPEVVRHDGDDPYLVVAADKGTATFSDIANSVSVDHGFWLGDAFASGGSAGYDHKK
MGITARGAWESVKRHFRELGHDTQTQDFTVVGVGDMSGDVFGNGMLLSKHIRLLAAFDHR
HIFIDPDPDAARSWEERQRLFDLPRSSWADYDASLLSAGGRVFDRSAKSLELTPEIRQRF
GIAKDHVTPLELMQTLLKAEVDLLWFGGIGTYLKAAEETNAEVGDKANDALRIDGRDVRA
KVIGEGANLGVTQRGRIEAAQHGVRLNTDAIDNSAGVDTSDHEVNIKILLNDVVVRGDMT
LKQRDQLLAAMTDEVAGLVLADNYLQSQALTVARAQGPDALEAQARLIRSLEKAGRLNRA
IEYLPDEEELSARMANREGLTRPELAVLLAYAKITLYDDLLASDLPDDPFMADDLTRYFP
KPLRKAHAEAVGRHRLRREIIATSVTNSLVNRTGPTFVKEMMEKTGMGPADVARAYTIVR
DAFGLRSLWTGIEDLDTVVPAALQTSMILETVRHMERAAAWFLASCQQPLDIARETEAFR
PGIETLLAGLDNVLDAEETARLTARVASYQEQGVPAELARRMAALPVLAAAPDLVRIAGR
TGRGVADVAAVYFMLGRRFGLEWLRDKAAAAKAENHWQKQAVAALVDDLFAHQTALTTRV
LEAVDQLPAEAPVEAWIAHRRPVVERVEQLLSELRTQPNVDLSMLAVANRQLRGLTAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory