Comparing Ac3H11_2062 FitnessBrowser__acidovorax_3H11:Ac3H11_2062 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
57% identity, 95% coverage: 21:414/416 of query aligns to 1:393/396 of 5dvjA
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
57% identity, 95% coverage: 21:414/416 of query aligns to 1:393/396 of 5dviA
8hqqA Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
52% identity, 91% coverage: 22:401/416 of query aligns to 2:383/398 of 8hqqA
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
48% identity, 94% coverage: 25:414/416 of query aligns to 7:392/395 of 4r2bA
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
32% identity, 87% coverage: 24:383/416 of query aligns to 2:355/392 of 2b3fA
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
32% identity, 87% coverage: 24:383/416 of query aligns to 2:355/392 of 2b3bC
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
32% identity, 87% coverage: 24:383/416 of query aligns to 2:355/392 of 2b3bA
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
26% identity, 52% coverage: 73:287/416 of query aligns to 50:261/390 of 3oo6A
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
28% identity, 51% coverage: 71:281/416 of query aligns to 55:266/406 of 7ehqA
Sites not aligning to the query:
3vxcA Crystal structure of xylobiose-bxle complex from streptomyces thermoviolaceus opc-520
31% identity, 38% coverage: 159:318/416 of query aligns to 138:320/398 of 3vxcA
Sites not aligning to the query:
4g68A Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus (see paper)
26% identity, 50% coverage: 64:273/416 of query aligns to 41:249/392 of 4g68A
Sites not aligning to the query:
4c1tA Structure of the xylo-oligosaccharide specific solute binding protein from bifidobacterium animalis subsp. Lactis bl-04 in complex with arabinoxylotriose (see paper)
28% identity, 35% coverage: 126:269/416 of query aligns to 105:251/396 of 4c1tA
Sites not aligning to the query:
1eljA The crystal structure of liganded maltodextrin-binding protein from pyrococcus furiosus (see paper)
25% identity, 49% coverage: 71:275/416 of query aligns to 50:239/380 of 1eljA
Sites not aligning to the query:
>Ac3H11_2062 FitnessBrowser__acidovorax_3H11:Ac3H11_2062
MWKMTKIAAVAVGLAAAMSASAGEVEVLHYWTSGGEAKSVAELKKIMQGKGHTWRDFAVA
GGGGDSAMTVLKSRVISGNPPSAAQTKGPAIQEWASEGVLANMDTLAKAEKWDELLPKVV
ADVMKYKGAYVAAPVNVHRVNWMWGSSEALKKAGVAAMPKTWDEFFAAADKLKAAGLVPV
AHGGQNWQDFTTFESVVLGVGGAKFYQDALVKLDNTALTSDTMKKSLETFRRIKGYTDPG
APGRDWNLATAMLIQGKAGFQLMGDWAKGEFLAAGKAPGKDFLCAAAPGSANAFTFNVDS
FILFKLKDAAAQKAQSDLASSIMSPAFQEVFNLNKGSIPVRAGQPMDKFDDCAKASAKDF
VDTAKSGGLVPSAAHGMAIAPATEGAIKDVVSQFWNDDKVSVADAMKKIAAAAKTK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory