Comparing BPHYT_RS07260 FitnessBrowser__BFirm:BPHYT_RS07260 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
2b33B Crystal structure of a putative endoribonuclease (tm0215) from thermotoga maritima msb8 at 2.30 a resolution
36% identity, 85% coverage: 17:138/143 of query aligns to 11:122/126 of 2b33B
2uynA Crystal structure of e. Coli tdcf with bound 2-ketobutyrate (see paper)
29% identity, 90% coverage: 10:138/143 of query aligns to 2:124/127 of 2uynA
2uykC Crystal structure of e. Coli tdcf with bound serine (see paper)
29% identity, 90% coverage: 10:138/143 of query aligns to 2:124/127 of 2uykC
7cd4A Crystal structure of the s103f mutant of bacillus subtilis (natto) yabj protein. (see paper)
39% identity, 55% coverage: 60:138/143 of query aligns to 44:121/124 of 7cd4A
Sites not aligning to the query:
3vczB 1.80 angstrom resolution crystal structure of a putative translation initiation inhibitor from vibrio vulnificus cmcp6
36% identity, 59% coverage: 55:138/143 of query aligns to 39:125/127 of 3vczB
Q94JQ4 Reactive Intermediate Deaminase A, chloroplastic; 2-iminobutanoate/2-iminopropanoate deaminase; EC 3.5.99.10 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 83% coverage: 20:138/143 of query aligns to 77:185/187 of Q94JQ4
Q7CP78 2-iminobutanoate/2-iminopropanoate deaminase; Enamine/imine deaminase; EC 3.5.99.10 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
36% identity, 59% coverage: 55:138/143 of query aligns to 40:125/128 of Q7CP78
Sites not aligning to the query:
5hp8A Crystal structures of rida in complex with pyruvate (see paper)
31% identity, 78% coverage: 27:138/143 of query aligns to 5:106/108 of 5hp8A
A0A1J1DL12 2-iminobutanoate/2-iminopropanoate deaminase; Allergen Der f 34; Enamine/imine deaminase; Allergen Der f 34.0101; EC 3.5.99.10 from Dermatophagoides farinae (American house dust mite) (see paper)
26% identity, 87% coverage: 13:137/143 of query aligns to 10:124/128 of A0A1J1DL12
Sites not aligning to the query:
P52759 2-iminobutanoate/2-iminopropanoate deaminase; Liver perchloric acid-soluble protein; L-PSP; Reactive intermediate imine deaminase A homolog; Translation inhibitor L-PSP ribonuclease; UK114 antigen homolog; rp14.5; EC 3.5.99.10 from Rattus norvegicus (Rat) (see paper)
35% identity, 55% coverage: 61:138/143 of query aligns to 51:127/137 of P52759
Sites not aligning to the query:
P80601 2-iminobutanoate/2-iminopropanoate deaminase; 14.3 kDa perchloric acid soluble protein; Translation inhibitor L-PSP ribonuclease; UK114 antigen; EC 3.5.99.10; EC 3.1.-.- from Capra hircus (Goat) (see paper)
35% identity, 55% coverage: 61:138/143 of query aligns to 51:127/137 of P80601
Sites not aligning to the query:
3lybB Structure of putative endoribonuclease(kp1_3112) from klebsiella pneumoniae
27% identity, 80% coverage: 27:141/143 of query aligns to 6:137/137 of 3lybB
P0AFQ5 3-aminoacrylate deaminase RutC; 3-AA deaminase; EC 3.5.-.- from Escherichia coli (strain K12) (see paper)
28% identity, 90% coverage: 11:139/143 of query aligns to 6:125/128 of P0AFQ5
5v4dA Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia pestis
37% identity, 57% coverage: 57:138/143 of query aligns to 44:125/127 of 5v4dA
3k0tC Crystal structure of pspto -psp protein in complex with d-beta-glucose from pseudomonas syringae pv. Tomato str. Dc3000 (see paper)
27% identity, 83% coverage: 20:137/143 of query aligns to 14:120/124 of 3k0tC
>BPHYT_RS07260 FitnessBrowser__BFirm:BPHYT_RS07260
MTNDSTIQGRIVPGKAKPRGRFPHVTRAGDFLFVSGTSSRRPDNSIAGASADELGTVQLD
IREQTRVVIENIRDILQSEGADLSNLVEISSFLVNMNDFGGYNAVYGEYFDETGPTRTTV
AVHQLPHPHLLIEMKAIAYAPQK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory