Comparing BPHYT_RS14820 FitnessBrowser__BFirm:BPHYT_RS14820 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
52% identity, 100% coverage: 1:343/344 of query aligns to 1:343/343 of P30750
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
51% identity, 100% coverage: 1:343/344 of query aligns to 2:344/344 of 3tuzC
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
51% identity, 100% coverage: 1:343/344 of query aligns to 2:344/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
51% identity, 100% coverage: 1:343/344 of query aligns to 2:344/344 of 6cvlD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
46% identity, 71% coverage: 1:245/344 of query aligns to 2:240/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
43% identity, 71% coverage: 1:245/344 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
43% identity, 71% coverage: 1:245/344 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
43% identity, 71% coverage: 1:245/344 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
43% identity, 71% coverage: 1:245/344 of query aligns to 3:242/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
41% identity, 71% coverage: 1:245/344 of query aligns to 1:240/240 of 4ymuJ
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 70% coverage: 16:257/344 of query aligns to 37:279/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 70% coverage: 16:257/344 of query aligns to 37:279/382 of 7aheC
Sites not aligning to the query:
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
42% identity, 64% coverage: 1:219/344 of query aligns to 1:215/219 of 8w6iD
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
42% identity, 64% coverage: 1:219/344 of query aligns to 1:215/222 of P0A9R7
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
41% identity, 65% coverage: 1:222/344 of query aligns to 2:220/227 of 8igqA
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
41% identity, 65% coverage: 1:222/344 of query aligns to 2:220/225 of 8iddA
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
41% identity, 65% coverage: 1:222/344 of query aligns to 1:219/229 of A5U7B7
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
39% identity, 65% coverage: 1:222/344 of query aligns to 1:218/222 of 8i6rB
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
41% identity, 64% coverage: 1:219/344 of query aligns to 1:215/218 of 8hd0A
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
37% identity, 65% coverage: 1:222/344 of query aligns to 3:220/229 of 6z67B
>BPHYT_RS14820 FitnessBrowser__BFirm:BPHYT_RS14820
MIEIRNISQRFAGPRGWVEALHNVNLSIPAGEVFGIIGRSGAGKSTLVRTLNLLTRPSEG
NIVVNGRDLTTLPAAQLREARREIGMIFQHFNLLSSRTVYENVALPLELAGMKRDEIEAN
VLPLLELVGLSAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAIL
DLLKRINRELNLTIVLITHQMDVIKQVCDRVAVLDAGRVVEEGKVIDVFLQPHHEVTRAL
IGDVIAQELPPAMKARVAERLKTGSGHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQ
IDEIQGQAFGSLAVLAGGEPAKVAQALTYLREQGVVVEELSYVE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory