Comparing BPHYT_RS29180 FitnessBrowser__BFirm:BPHYT_RS29180 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 3 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
24% identity, 93% coverage: 21:306/306 of query aligns to 3:281/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
28% identity, 68% coverage: 100:306/306 of query aligns to 86:296/296 of P68183
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
29% identity, 39% coverage: 160:278/306 of query aligns to 142:260/285 of 7cagA
>BPHYT_RS29180 FitnessBrowser__BFirm:BPHYT_RS29180
MNTLSPPLKGGTPPSRARPRRRRTAFTPARLGVYAFLLTAALFFLLPLYVMLVTSVKPMN
EIRLGNLLAFPTHFTLSAWSAAWQSACTGLDCNGIQVGFWNSVRIVVPSTILSIAIGAVN
GYALSFWRPRGAGLLFGVLLMGAFIPVQVMVYPLVRVLASVHLFSSLPGIVVIHTIFGMP
VMTLLFRNYYVSIPQELFKAARIDGGGFWRIFVQLMLPMSTPIIVVAVIMQVTGIWNDFI
LGLVFAGTKNLPMTVQLNNIINTTTGERLYNVNMAATILTSMVPLAVYFVSGRWFVRGIA
SGAVKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory