SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS25275 FitnessBrowser__Koxy:BWI76_RS25275 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
28% identity, 91% coverage: 9:155/162 of query aligns to 501:648/650 of O31645

query
sites
O31645
Q
 
K
L
 
L
S
 
T
N
 
D
V
 
I
L
 
I
N
 
S
Q
 
P
E
 
E
C
 
L
T
 
I
R
 
E
S
 
P
Q
 
N
V
 
L
H
 
S
C
 
G
Q
 
E
S
 
T
K
 
S
K
 
D
R
 
D
A
 
I
L
 
I
-
 
D
E
 
E
I
 
L
I
 
I
S
 
Q
E
 
K
L
 
L
A
 
S
A
 
R
K
 
R
Q
 
G
L
 
A
G
 
L
L
 
L
S
 
S
S
 
E
Q
 
S
I
 
G
V
 
F
F
 
K
E
 
Q
A
 
A
I
 
I
L
 
L
T
 
N
R
 
R
E
 
E
K
 
Q
M
 
Q
G
 
G
S
 
T
T
 
T
G
 
A
I
 
I
G
 
G
N
 
M
G
 
N
I
 
I
A
 
A
I
 
I
P
 
P
H
 
H
G
 
G
K
 
K
L
 
S
E
 
E
E
 
A
D
 
V
T
 
R
L
 
E
R
 
P
A
 
S
V
 
V
G
 
A
V
 
F
F
 
G
V
 
I
Q
 
K
L
 
-
E
 
R
T
 
S
P
 
G
I
 
V
A
 
D
F
 
W
D
 
N
A
 
S
I
 
L
D
 
D
N
 
G
Q
 
S
P
 
E
V
 
A
D
 
K
L
 
L
L
 
I
F
 
F
A
 
M
L
 
I
L
 
A
V
 
V
P
 
P
A
 
K
D
 
E
Q
 
S
-
 
G
T
 
G
K
 
N
T
 
Q
H
 
H
L
 
L
H
 
K
T
 
I
L
 
L
S
 
Q
L
 
M
V
 
L
A
 
S
K
 
R
R
 
K
L
 
L
A
 
M
D
 
D
K
 
D
T
 
N
I
 
Y
C
 
R
R
 
E
R
 
R
L
 
L
R
 
L
A
 
S
A
 
V
Q
 
Q
S
 
T
D
 
T
E
 
E
E
 
E
L
 
A
Y
 
Y
E
 
K
I
 
L
I
 
L
T
 
E
E
 
E

Sites not aligning to the query:

1j6tA Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
26% identity, 78% coverage: 27:153/162 of query aligns to 17:141/144 of 1j6tA

query
sites
1j6tA
S
 
T
K
 
K
K
 
E
R
 
E
A
 
A
L
 
I
E
 
R
I
 
F
I
 
A
S
 
G
E
 
E
L
 
Q
A
 
L
A
 
V
K
 
K
Q
 
G
L
 
G
G
 
Y
L
 
V
S
 
E
S
 
P
Q
 
E
I
 
Y
V
 
V
F
 
-
E
 
Q
A
 
A
I
 
M
L
 
L
T
 
D
R
|
R
E
 
E
K
 
K
M
 
L
G
 
T
S
 
P
T
 
T
G
 
Y
I
 
L
G
 
G
N
 
E
G
 
S
I
 
I
A
 
A
I
 
V
P
 
P
H
|
H
G
 
G
K
 
T
L
 
V
E
 
E
-
 
A
-
 
K
E
 
D
D
 
R
T
 
V
L
 
L
R
 
K
A
 
T
V
 
G
G
 
V
V
 
V
F
 
F
V
 
C
Q
 
Q
L
 
Y
E
 
P
T
 
E
P
 
G
I
 
V
A
 
R
F
 
F
D
 
G
A
 
E
I
 
E
D
 
E
N
 
D
Q
 
D
P
 
I
V
 
A
D
 
R
L
 
L
L
 
V
F
 
I
A
 
G
L
 
I
L
 
-
V
 
-
P
 
-
A
 
A
D
 
A
Q
 
R
T
 
N
K
 
N
T
 
E
H
|
H
L
 
I
H
 
Q
T
 
V
L
 
I
S
 
T
L
 
S
V
 
L
A
 
T
K
 
N
R
 
A
L
 
L
A
 
D
D
 
D
K
 
E
T
 
S
I
 
V
C
 
I
R
 
E
R
 
R
L
 
L
R
 
A
A
 
H
A
 
T
Q
 
T
S
 
S
D
 
V
E
 
D
E
 
E
L
 
V
Y
 
L
E
 
E
I
 
L
I
 
L

C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
27% identity, 88% coverage: 13:155/162 of query aligns to 3:141/143 of C0H3V2

query
sites
C0H3V2
V
 
V
L
 
L
N
 
A
Q
 
K
E
 
E
C
 
N
T
 
I
R
 
K
S
 
L
Q
 
N
V
 
Q
H
 
T
C
 
V
Q
 
S
S
 
S
K
 
K
K
 
E
R
 
E
A
 
A
L
 
I
E
 
K
I
 
-
I
 
-
S
 
-
E
 
-
L
 
L
A
 
A
A
 
G
K
 
Q
Q
 
T
L
 
L
-
 
I
-
 
D
-
 
N
G
 
G
L
 
Y
S
 
V
S
 
T
Q
 
E
I
 
D
V
 
Y
F
 
I
E
 
S
A
 
K
I
 
M
L
 
F
T
 
E
R
 
R
E
 
E
K
 
E
M
 
T
G
 
S
S
 
S
T
 
T
G
 
F
I
 
M
G
 
G
N
 
N
G
 
F
I
 
I
A
 
A
I
 
I
P
 
P
H
 
H
G
 
G
K
 
T
L
 
E
E
 
E
E
 
A
D
 
K
T
 
S
-
 
E
L
 
V
R
 
L
A
 
H
V
x
S
G
 
G
V
 
I
F
 
S
V
 
I
Q
 
-
L
 
I
E
 
Q
T
 
I
P
 
P
I
 
E
A
 
G
F
 
V
D
 
E
A
 
Y
I
 
G
D
 
E
N
 
G
Q
 
N
P
 
T
V
 
A
D
 
K
L
 
V
L
 
V
F
 
F
A
 
G
L
 
I
L
 
-
V
 
-
P
 
-
A
 
A
D
 
G
Q
 
K
T
 
N
K
 
N
T
 
E
H
 
H
L
 
L
H
 
D
T
 
I
L
 
L
S
 
S
L
 
N
V
 
I
A
 
A
K
 
I
R
 
I
L
 
C
A
 
S
D
 
E
K
 
E
T
 
E
I
 
N
C
 
I
R
 
E
R
 
R
L
 
L
R
 
I
A
 
S
A
 
A
Q
 
K
S
 
S
D
 
E
E
 
E
E
 
D
L
 
L
Y
 
I
E
 
A
I
 
I
I
 
F
T
 
N
E
 
E

P00550 PTS system mannitol-specific EIICBA component; EIICBA-Mtl; EII-Mtl; EC 2.7.1.197 from Escherichia coli (strain K12) (see 2 papers)
27% identity, 63% coverage: 52:153/162 of query aligns to 533:633/637 of P00550

query
sites
P00550
E
 
Q
A
 
A
I
 
M
L
 
L
T
 
D
R
|
R
E
 
E
K
 
K
M
 
L
G
 
T
S
 
P
T
 
T
G
 
Y
I
 
L
G
 
G
N
 
E
G
 
S
I
 
I
A
 
A
I
 
V
P
 
P
H
|
H
G
 
G
K
 
T
L
 
V
E
 
E
-
 
A
-
 
K
E
 
D
D
 
R
T
 
V
L
 
L
R
 
K
A
 
T
V
 
G
G
 
V
V
 
V
F
 
F
V
 
C
Q
 
Q
L
 
Y
E
 
P
T
 
E
P
 
G
I
 
V
A
 
R
F
 
F
D
 
G
A
 
E
I
 
E
D
 
E
N
 
D
Q
 
D
P
 
I
V
 
A
D
 
R
L
 
L
L
 
V
F
 
I
A
 
G
L
 
I
L
 
-
V
 
-
P
 
-
A
 
A
D
 
A
Q
 
R
T
 
N
K
 
N
T
 
E
H
 
H
L
 
I
H
 
Q
T
 
V
L
 
I
S
 
T
L
 
S
V
 
L
A
 
T
K
 
N
R
 
A
L
 
L
A
 
D
D
 
D
K
 
E
T
 
S
I
 
V
C
 
I
R
 
E
R
 
R
L
 
L
R
 
A
A
 
H
A
 
T
Q
 
T
S
 
S
D
 
V
E
 
D
E
 
E
L
 
V
Y
 
L
E
 
E
I
 
L
I
 
L

Sites not aligning to the query:

Query Sequence

>BWI76_RS25275 FitnessBrowser__Koxy:BWI76_RS25275
MINNDSALQLSNVLNQECTRSQVHCQSKKRALEIISELAAKQLGLSSQIVFEAILTREKM
GSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTH
LHTLSLVAKRLADKTICRRLRAAQSDEELYEIITEAGSNNEA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory