SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS27575 FitnessBrowser__Koxy:BWI76_RS27575 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
43% identity, 92% coverage: 1:96/104 of query aligns to 1:95/650 of O31645

query
sites
O31645
M
 
M
N
 
K
I
 
L
V
 
L
C
 
A
V
 
I
A
 
T
A
 
S
C
|
C
T
 
P
A
 
N
G
 
G
I
 
I
A
 
A
H
 
H
T
 
T
Y
 
Y
I
 
M
A
 
A
R
 
A
E
 
E
K
 
N
L
 
L
I
 
Q
K
 
K
G
 
A
A
 
A
K
 
D
A
 
R
L
 
L
G
 
G
H
 
V
N
 
S
V
 
I
K
 
K
V
 
V
E
 
E
T
 
T
Q
 
Q
G
 
G
T
 
G
I
 
I
G
 
G
T
 
V
E
 
E
N
 
N
E
 
K
L
 
L
A
 
T
A
 
E
E
 
E
D
 
E
I
 
I
D
 
R
A
 
E
A
 
A
D
 
D
V
 
A
V
 
I
I
 
I
L
 
I
A
 
A
I
 
A
D
 
D
V
 
R
K
 
S
I
 
V
K
 
N
G
 
-
E
 
K
E
 
D
R
 
R
F
 
F
K
 
I
N
 
G
K
 
K
R
 
K
I
 
L
V
 
L
R
 
S
V
 
V
K
 
G
T
 
V
E
 
Q
V
 
D
V
 
G
I
 
I
K
 
R
S
 
K
P
 
P
I
 
E
Q
 
E
F
 
L
I
 
I
E
 
Q
K
 
K

Sites not aligning to the query:

P20966 PTS system fructose-specific EIIB'BC component; EIIB'BC-Fru; EC 2.7.1.202 from Escherichia coli (strain K12) (see paper)
38% identity, 90% coverage: 3:96/104 of query aligns to 106:198/563 of P20966

query
sites
P20966
I
 
V
V
 
V
C
 
A
V
 
V
A
 
T
A
 
A
C
|
C
T
 
P
A
 
T
G
 
G
I
 
V
A
 
A
H
 
H
T
 
T
Y
 
F
I
 
M
A
 
A
R
 
A
E
 
E
K
 
A
L
 
I
I
 
E
K
 
T
G
 
E
A
 
A
K
 
K
A
 
K
L
 
R
G
 
G
H
 
W
N
 
W
V
 
V
K
 
K
V
 
V
E
 
E
T
 
T
Q
 
R
G
 
G
T
 
S
I
 
V
G
 
G
T
 
A
E
 
G
N
 
N
E
 
A
L
 
I
A
 
T
A
 
P
E
 
E
D
 
E
I
 
V
D
 
A
A
 
A
A
 
A
D
 
D
V
 
L
V
 
V
I
 
I
L
 
V
A
 
A
I
 
A
D
 
D
V
 
I
K
 
E
I
 
V
K
 
D
G
 
-
E
 
L
E
 
A
R
 
K
F
 
F
K
 
A
N
 
G
K
 
K
R
 
P
I
 
M
V
 
Y
R
 
R
V
 
T
K
 
S
T
 
T
E
 
G
V
 
L
V
 
A
I
 
L
K
 
K
S
 
K
P
 
T
I
 
A
Q
 
Q
F
 
E
I
 
L
E
 
D
K
 
K

Query Sequence

>BWI76_RS27575 FitnessBrowser__Koxy:BWI76_RS27575
MNIVCVAACTAGIAHTYIAREKLIKGAKALGHNVKVETQGTIGTENELAAEDIDAADVVI
LAIDVKIKGEERFKNKRIVRVKTEVVIKSPIQFIEKVEKSLANA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory