SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CA265_RS22975 FitnessBrowser__Pedo557:CA265_RS22975 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
56% identity, 88% coverage: 31:260/260 of query aligns to 15:240/240 of 4qhzC

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Query Sequence

>CA265_RS22975 FitnessBrowser__Pedo557:CA265_RS22975
MNKYTLLFIPALFAGQAMAQDKKPDPAKDPKTTEVWEPVPKVVTPGKLPQDAPSDATILF
GGRNLDAWHSVKDPSKPAEWTIDDGFFTVKKGTGNIETNKKFTDYQLHMEWKIPENISGE
GQARGNSGVFLASTGGGDNGYEIQIMDAYNNKTYVNGQTGSVYKQAIPLANANKKPGEWQ
YYDIIWNAPRFNEDGTVQKPASVTVFLNGVLLQNGFVLKGETRYIGAPEYKKHGPSSIKL
QDHGDPSPAISYRNIWVREL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory