SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_0158 FitnessBrowser__Cola:Echvi_0158 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2df8A Crystal structure of the ph0510 protein from pyrococcus horikoshii ot3 in complex with beta-d-fructopyranose-1-phosphate
28% identity, 82% coverage: 61:379/390 of query aligns to 33:324/325 of 2df8A

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2df8A
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Query Sequence

>Echvi_0158 FitnessBrowser__Cola:Echvi_0158
MIQTTYLTLDSEKAEELGAFHTAKEIAGQPELWQRVFRQLKNEQNAIHSFIKPILEKGNA
RIVLTGAGSSAFIGESAQGIVQQLTGVHTQAIATTDVVTHPELFFLEKVPTLLVSFARSG
NSPESVEAVRLADAHCNEIYHLIITCNPDGELAAYANDCGGNCLALVLPEGSNDNSLAMT
GSFTSMLLAILLVAGIDQLDQLKQQFEDAAETANHILRNSLHEFEAVAKSDFNRVIFLGS
GAMLGVARECHLKLQELTDGKVVCKHDSFLGFRHGPRAVANEESIVVYLFSRDPHVVRYE
TDLAKSIGEDKRKIRTISFAAENTDGYHSILDLPAVGTSEKAIFNVLPATMVGQLLGFYK
CLQLGLHPDNPSVSGAISRVVQGVTIYNKA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory