SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_2921 FitnessBrowser__Cola:Echvi_2921 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
56% identity, 88% coverage: 31:251/251 of query aligns to 15:240/240 of 4qhzC

query
sites
4qhzC
Q
 
E
A
 
M
T
 
S
E
 
E
V
 
F
W
 
Y
E
 
E
P
 
P
V
 
V
P
 
P
P
 
P
V
 
V
V
 
V
T
 
T
P
 
P
G
 
G
E
 
T
E
 
D
-
 
L
-
 
K
-
 
G
-
 
G
N
 
G
H
 
F
M
 
T
P
 
A
P
 
P
S
 
S
D
 
D
A
 
A
I
 
I
V
 
V
L
 
L
F
 
F
D
 
D
G
 
G
S
 
K
D
 
D
L
 
L
S
 
S
A
 
A
W
 
W
K
 
E
S
 
S
V
 
V
K
 
K
T
 
-
G
 
G
G
 
G
E
 
A
A
 
A
E
 
E
W
 
W
T
 
D
V
 
V
H
 
H
D
 
D
G
 
G
I
 
V
F
 
F
T
 
T
V
 
V
K
 
N
P
 
K
G
 
K
T
 
K
G
 
G
E
 
D
I
 
I
A
 
Q
T
 
T
K
 
K
E
 
Q
K
 
K
F
 
F
G
 
N
D
 
D
V
 
F
Q
 
Q
V
 
M
H
 
H
I
 
I
E
 
E
W
 
W
K
 
Q
A
 
V
P
 
P
D
 
T
V
 
N
V
 
I
K
 
T
G
 
G
E
 
E
G
 
S
Q
 
Q
G
 
S
R
 
R
G
 
G
N
|
N
S
|
S
G
 
G
L
 
I
F
 
F
F
 
L
C
 
Q
E
 
G
R
 
M
Y
 
Y
E
|
E
V
 
V
Q
|
Q
I
 
V
L
 
L
D
 
D
S
 
C
Y
 
Y
Q
 
N
N
 
N
R
 
P
T
 
T
Y
 
Y
S
 
V
N
 
N
G
 
G
Q
 
Q
A
 
T
A
 
G
S
 
S
L
 
I
Y
 
Y
K
 
K
E
 
Q
G
 
S
I
 
I
P
 
P
L
 
L
A
 
A
N
 
N
A
 
A
M
 
M
R
 
R
S
 
K
P
 
P
Q
 
G
E
 
E
W
 
W
N
 
N
T
 
V
Y
 
Y
D
 
D
V
 
I
F
 
I
F
 
Y
T
 
T
A
 
A
P
 
P
R
 
T
F
 
F
N
 
K
K
 
E
D
 
D
G
 
G
M
 
S
V
 
Y
I
 
R
S
 
T
P
 
H
A
 
P
Y
 
T
V
 
V
T
 
T
V
 
V
I
 
I
H
 
Q
N
 
N
G
 
G
V
 
V
L
 
V
V
 
L
Q
 
Q
N
 
N
H
 
H
Y
 
T
E
 
T
V
 
I
K
 
L
G
 
G
S
 
T
T
 
T
A
 
E
Y
 
W
I
 
I
G
 
G
V
 
F
H
 
P
K
 
Q
Y
 
V
E
 
K
A
 
K
H
 
H
E
 
G
T
 
A
E
 
G
L
 
-
P
 
P
I
 
I
K
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
N
 
D
-
 
P
-
 
S
-
 
E
L
 
P
V
 
I
N
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
V
 
I
R
 
R
K
 
E
L
 
L

Query Sequence

>Echvi_2921 FitnessBrowser__Cola:Echvi_2921
MKLNLLFPVLAGSMLAVPVMAQHDPIQLPPQATEVWEPVPPVVTPGEENHMPPSDAIVLF
DGSDLSAWKSVKTGGEAEWTVHDGIFTVKPGTGEIATKEKFGDVQVHIEWKAPDVVKGEG
QGRGNSGLFFCERYEVQILDSYQNRTYSNGQAASLYKEGIPLANAMRSPQEWNTYDVFFT
APRFNKDGMVISPAYVTVIHNGVLVQNHYEVKGSTAYIGVHKYEAHETELPIKLQDHGNL
VNFRNIWVRKL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory