SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF136 FitnessBrowser__psRCH2:GFF136 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 94% coverage: 7:222/229 of query aligns to 9:215/215 of 4ymtC

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sites
4ymtC
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A
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S
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Y
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E
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I
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R
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G
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Q
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E
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G
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
36% identity, 94% coverage: 7:221/229 of query aligns to 9:214/214 of 4ymwC

query
sites
4ymwC
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Query Sequence

>GFF136 FitnessBrowser__psRCH2:GFF136
MTWEIFIKWLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFF
RGTPLLVQLFLVYYGMAQFDVVRQSALWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQN
VPHGEIEAARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTG
MARKIAARTYLHEEMFLTAGLIYLLIAFILMQGFKLLERWLRVDACQGR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory