Comparing GFF2216 FitnessBrowser__Marino:GFF2216 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
24% identity, 69% coverage: 112:521/594 of query aligns to 75:436/450 of Q7LYW7
Sites not aligning to the query:
1eu8A Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
24% identity, 69% coverage: 112:521/594 of query aligns to 34:395/407 of 1eu8A
Sites not aligning to the query:
>GFF2216 FitnessBrowser__Marino:GFF2216
MYEKQQKQETIMNKLALLIGLTLLIGPPVTAGPLFESLSGEKQSQIRTLIEDHFPDSTLS
ADEQAEELAWFAHAASELKGTEISVLSEQLPTHDYEAEVLAPAFSELTEIPVTHDRRPEG
EVIRQINLQRIMAAKGRYDAFVNDSDMIGTHSRSGWALALSDYMEGAGEAFTLPTLSLED
FIGLEFVTGPDGKMYQLPDQQFANLYWFRYDWFQRPELRVRFMERYGYELGVPVNWSAYE
DIAEFFTVHVREIDGERVYGHMDYGKRDPSLGWRFTDAWFSMAGAGDRGIPNGLPVDEWG
IRMEGCHPVGSSVSRGGATNSPAAVYALAKYIDWLQRFAPPEAANMTFSEAGPVPARGQV
AQQIFWYTAFTSDMAKEGLPVVNEDGTPKWRMAPSPRGAYWQEGMKLGYQDVGAWTIPRA
MGSNQQKAAWLYAQFTVSRTVSLQKTLYGLTPIRLSDLESPQMQEKAPTLGGLVEFYRSP
ARTAWSPTGVNVPDYPRLAKLWWPNIADAVTGKVTPQQALDNLAAAQDRTLSVIERNFLA
GDCGPKMAKEEQLKDADWWLAQPGAPKPRLRNEKPPGKTIRYEDLLKQWDVAAK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory