Comparing GFF2268 FitnessBrowser__WCS417:GFF2268 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
27% identity, 61% coverage: 58:218/264 of query aligns to 73:232/281 of P94530
>GFF2268 FitnessBrowser__WCS417:GFF2268
MSRNGPLALGFHGVVVLFMMAPLVVVCLVAFTPENTLSLPTSGFSLRWFRAVFERADFIQ
AFYNSLILAFTAATLATLIAVPAALAISRYTFPGRNFFSALFLSPIIIPHLVLGVAMLRL
FALMGVNGSFTWLMLAHVVIITPYVLRLVLAAAIGIDRSAEQAAESLGASRFTLFRQITL
PMILPGVAGGWLLAFINSFDEVTLSIFVSSPATQTLPVRMYVYATESIDPMMAAVSALVI
ALTAATMILLDRVYGLDRVLVGKH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory