Comparing GFF2270 FitnessBrowser__psRCH2:GFF2270 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
59% identity, 97% coverage: 2:158/162 of query aligns to 1:157/158 of 2yjvC
1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
45% identity, 92% coverage: 5:153/162 of query aligns to 7:155/156 of 1nxjA
>GFF2270 FitnessBrowser__psRCH2:GFF2270
MQYVTPDLCDAYPELVQVVEPLFSNFGGRDSFGGEIVTIKCFEDNSLVKDQVDVDGTGKV
LVVDGGGSLRRALLGDMLAEKAARNGWEGLVIYGCVRDVDVLAQTELGVQALASHPMKTD
KRGIGDLNVPVTFCGVTFRPGEYVYADNNGIIVSPEPLSVPE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory