Comparing GFF2489 FitnessBrowser__WCS417:GFF2489 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
1m2wA Pseudomonas fluorescens mannitol 2-dehydrogenase ternary complex with NAD and d-mannitol (see paper)
95% identity, 100% coverage: 1:492/493 of query aligns to 1:492/492 of 1m2wA
1lj8A Crystal structure of mannitol dehydrogenase in complex with NAD (see paper)
95% identity, 100% coverage: 1:492/493 of query aligns to 1:492/492 of 1lj8A
7rk5B Mannitol-2-dehydrogenase bound to nadh from aspergillus fumigatus
44% identity, 98% coverage: 1:485/493 of query aligns to 3:494/501 of 7rk5B
4im7A Crystal structure of fructuronate reductase (ydfi) from e. Coli cft073 (efi target efi-506389) complexed with nadh and d-mannonate
39% identity, 96% coverage: 11:485/493 of query aligns to 3:477/483 of 4im7A
P09424 Mannitol-1-phosphate 5-dehydrogenase; EC 1.1.1.17 from Escherichia coli (strain K12) (see paper)
26% identity, 42% coverage: 169:374/493 of query aligns to 99:293/382 of P09424
Q4X1A4 Mannitol-1-phosphate 5-dehydrogenase; M1PDH; MPD; MPDH; EC 1.1.1.17 from Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) (Neosartorya fumigata) (see paper)
24% identity, 31% coverage: 224:374/493 of query aligns to 154:294/388 of Q4X1A4
>GFF2489 FitnessBrowser__WCS417:GFF2489
MKLNKQNLAQLALQVKLPTYEIASTTQGIAHIGVGGFHRAHQAYYTDALMNTGVGLDWSI
CGVGLRAEDRKARDDLAGQDYLFTLYELGDTDDTEVRVIGSISDMLLAEDGAQALIDKLA
DPAIRIVSLTITEGGYCIDDSNGEFMAHLPQIQHDLAHPSAPKTVFGFICAALTKRRAAG
TPAFTVMSCDNLPHNGAVTRKALLAFAALHNAELHDWIKANVSFPNAMVDRITPMTSTAH
RLQLHDDHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWETVGVQFTDDVTPYEEMKIGLLN
GSHLALTYLGFLKGYRFVHETMNDPVFVAYMRAYMDLDVTPNLAPVPGIDLTDYKQTLVD
RFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDEN
GVSYKIPDPRAEFCQGLVSDDALISQRLLAVEEIFGTAIPNSPGFVAAFERCFVSLRDNG
VTATLQHLLKKPN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory