Comparing GFF2709 FitnessBrowser__psRCH2:GFF2709 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 16 hits to proteins with known functional sites (download)
8ho8A The cryo-em structure of cellobiose phosphorylase from clostridium thermocellum in complex with cellobiose
28% identity, 27% coverage: 2046:2817/2843 of query aligns to 2:785/809 of 8ho8A
3qdeA The structure of cellobiose phosphorylase from clostridium thermocellum in complex with phosphate (see paper)
28% identity, 27% coverage: 2046:2817/2843 of query aligns to 3:786/811 of 3qdeA
1v7xA Crystal structure of vibrio proteolyticus chitobiose phosphorylase in complex with glcnac and sulfate (see paper)
29% identity, 27% coverage: 2046:2817/2843 of query aligns to 3:755/779 of 1v7xA
Sites not aligning to the query:
1v7vA Crystal structure of vibrio proteolyticus chitobiose phosphorylase (see paper)
29% identity, 27% coverage: 2046:2817/2843 of query aligns to 3:755/779 of 1v7vA
Sites not aligning to the query:
Q76IQ9 N,N'-diacetylchitobiose phosphorylase; Chitobiose phosphorylase; EC 2.4.1.280 from Vibrio proteolyticus (Aeromonas proteolytica) (see paper)
28% identity, 27% coverage: 2046:2817/2843 of query aligns to 3:777/801 of Q76IQ9
Sites not aligning to the query:
3s4bA Cellobiose phosphorylase from cellulomonas uda in complex with glucose
29% identity, 27% coverage: 2047:2810/2843 of query aligns to 4:793/822 of 3s4bA
3s4aA Cellobiose phosphorylase from cellulomonas uda in complex with cellobiose
29% identity, 27% coverage: 2047:2810/2843 of query aligns to 4:793/822 of 3s4aA
3qfzA Crystal structure of cellvibrio gilvus cellobiose phosphorylase complexed with sulfate and 1-deoxynojirimycin
29% identity, 27% coverage: 2047:2803/2843 of query aligns to 4:785/822 of 3qfzA
3qfyA Crystal structure of cellvibrio gilvus cellobiose phosphorylase complexed with sulfate and isofagomine
29% identity, 27% coverage: 2047:2803/2843 of query aligns to 4:785/822 of 3qfyA
2cqtA Crystal structure of cellvibrio gilvus cellobiose phosphorylase crystallized from sodium/potassium phosphate (see paper)
29% identity, 27% coverage: 2047:2803/2843 of query aligns to 4:785/822 of 2cqtA
3acsA Crystal structure of cellvibrio gilvus cellobiose phosphorylase w488f mutant
29% identity, 27% coverage: 2047:2803/2843 of query aligns to 4:785/822 of 3acsA
4zliA Cellobionic acid phosphorylase - 3-o-beta-d-glucopyranosyl-alpha-d- glucopyranuronic acid complex (see paper)
26% identity, 24% coverage: 2114:2789/2843 of query aligns to 77:734/785 of 4zliA
4zlgA Cellobionic acid phosphorylase - gluconic acid complex (see paper)
26% identity, 24% coverage: 2114:2789/2843 of query aligns to 77:734/785 of 4zlgA
4zlfA Cellobionic acid phosphorylase - cellobionic acid complex (see paper)
26% identity, 24% coverage: 2114:2789/2843 of query aligns to 77:734/785 of 4zlfA
6gh3A Paenibacillus sp. Ym1 laminaribiose phosphorylase with alpha-man-1- phosphate bound (see paper)
24% identity, 14% coverage: 2147:2537/2843 of query aligns to 111:535/902 of 6gh3A
Sites not aligning to the query:
6gh2A Paenibacillus sp. Ym1 laminaribiose phosphorylase with alpha-glc-1- phosphate bound (see paper)
24% identity, 14% coverage: 2147:2537/2843 of query aligns to 111:535/908 of 6gh2A
Sites not aligning to the query:
>GFF2709 FitnessBrowser__psRCH2:GFF2709
MTSVFRHILGRQQRSPVWSDLAPVREELFGTERLEHHARSLAAAQPITKRPPVVSSLHAR
LSENAAVLLAAYRSSASELEAGRSVVPAAEWLLDNYHLVEAQIREIRDDLPPGFYRQLPK
LAEGPFAGYPRVFGLAWAFVAHTDSHFDPETLRRFIVAYQQVQPLTIGELWAVAITLRIV
LIENLRRLSDQITDGSITRAAADALASRLLCAASAKRTLEDEIATRGSETMSVVFAAELA
KRLRDQDPRTTPALGWLEEELGRQGSTIDEVVQHSQQRQGASNVSVRNVITSMRLISDID
WTELFESISLVDARLRADSAFASMDFPTRNLYRSAIEQLARGSSATELEVAEAALSAARA
APTTDLAQDERVGDPGYHLIGEGRLALERSIGFSAPLGLRLSRFNVQLGIVGYVGAILLV
TALLLSVGLQALAGVGVTAGWLALLAVVAFLPVTDVATTLINRLVTWRFGAMALPALDLT
AGVPQSLRTLVAVPTLLTSEADLLEQIERIEVHHLAGAGGDLTFALLTDGLDADQETLPG
DAHLLAVAVAAIADLNRRYGPAPGGSRFLILHRRRQYNPSEGCWMGWERKRGKLHELNRL
LRGASDTSYMPLAGCAQQVPSDVRYVITLDADTRLPRDAAMRLIGKMAHPLNRPRFSEAE
QRVINGYAILQPRVTPSLPVGREGSFYQRVFSSPGGMDPYAAAVSDVYQDLFGEGSFTGK
GIYDIDAFEAALAGRVPENSMLSHDLFEGVFARAGLATDVEVVEEFPSRYEVSGKRQHRW
TRGDWQLLPWIFGARRGAQALPDIGRFKMLDNLRRSLVAPITLLALTLCWLLPLPAALIG
SALILVTMAIPAFLPICFALLPARSGICAQSHLRRLLGDLRLAASQTGLNLAFLPDQAWR
MGDAIVRTLSRLAARHHLLEWTTAAQSAISPRLKLSGFYRGMAGGIALGVGTALFALLIA
PGSWPVVLPFALLWLCAPAIALWASRSPRIAPGQQLAEADAEELRLIARRTWRFFETFVT
PDDNMLPPDNFQEDPRPVVARRTSPTNMGLYLLSAITARDFGWAGTLQTLDRLEATLGSM
SRLQRHRGHFFNWYATEDMRVLEPAYVSAVDSGNLAGHLIAIANACEEWLDAPTAPNARA
GLHDTLLLIRQAMAALPTTSGKRGRALSDLLDQIAAQLGEEQALDTLSATLHQLAEKAMR
LSLEVAPPSADDQSSDLHFWVDALGRSLSEHIRDRQLQGDTLSETEARLHEISRTTRQMA
LEMDFAFLLDPERKLLSIGYGLAENSLDPSCYDLLASEARLASLFAIAKGDVTTRHWFRL
GRTATPLGNGSALISWSGSMFEYLMPSLVMRAPAGSLLEQTNRLVVQRQQDYGNDRNVPW
GVSESAYHARDMEFTYQYSNFGVPGLGLKRGLAENLVIAPYATGLATMVDAPGALANYRR
LAQMGAVGRYGFYEALDFTPARLPDGQSVTIVRNYMAHHQGMTIVAIANTLQDGQMRARF
HREPMIQACELLLQERMPRDVAIAHPRAEEVKIRAVEASGDPQALRRLNTCAAGAAPVTH
LLSNGRYAVMLTAAGAGYSRWRDIAVTRWREDASRDDYGSFIFLRDTADGRVWPAGGQPS
DSDAVSHEVIFAEDRAEFVRHDLDLTTTLDVLVSGEDDGEVRRVSLVNSGAYAREIELTS
YSEVVLTTPSTDNAHPAFAKLFVVTEYLPDFGALLATRRLRSESERPIWAAHFAVVEGEV
VADPQYETDRARFIAQRPNVASAAVITEGLALTNTVGTVLDPIFALKYRIKVAPGKVARV
AFWTFVAGSRDEVLNLIEKHHDRSAYDRAKTLAWTQAQVQLRHLDVKPAEAADFQRLGAP
ILYADPQFRAPSAAIIEGAGAQSGLWPHSISGDLPIVLLRIDDVQDIAQVRQLLRAHEYW
RMKRLAVDLVILNEHASSYLQDLQIAIETAVRSSQSRPRFGAELAQGSVYMLRADLLSTE
ARALLRSVARVSLIARRGPIDKQLANQLLASQVPLMAPRLSARPSTAIAQPSAIDVSPHL
ECFNGLGGFDKDGREYVTLLDAGANTPAPWINVIANPQFGFQVSAQGSGYTWAENSRENQ
LTPWSNDPVTDPCGEAFYVRDEDSGALFSPTAQPIRDTGLYVARHGHGYSRFEHQADGIA
MDLLEYVPLADPIKISRLTLRNLSAVPRRLSVTRYSEWVLGTARGANAPFIITERDESCG
MLLARTPWSSAFPGRVAFADLGGRQTAWTADRRELLGRNSGPATPAALLTGAPLTGATGA
GMDPCAALQTRVELAAGESIEIIAFIGQCPSADAARALVERYRQTDLDAVLLEVTEHWRS
ALGAVQVKTPDRAMDIMLNGWLLYQTLACRIWARSAFYQASGAYGFRDQLQDGMALTFSR
PEATRSHILRAASRQFPEGDVQHWWLPHSGQGVRTRISDDRVWLAFATATYIQVAGDATI
LDEPVTFLEGPLLKPGEHDAFFQPMMAGDAAPLFEHCARGLDQCLELTGELGLPLIGGGD
WNDGMNRVGEDGKGESVWLGWLLLRTIELFAPLADQRGTVADVQRAERWRKHAQALADSL
EEKAWDGEWYRRATFDDGTWLGSKDSDECRIDSIAQSWAVLSGAADPARAKQAMASVRQH
LIREQDGLALLFTPPFDKTEKEPGYIKGYPPGLRENGGQYSHAAMWAMLAFAKLGDGDAA
CRMFSLLNPINHALTPEGSRRYKVEPYVVAADVYGVAPHKGRGGWTWYTGAAGWMHRAGV
EGILGIRREGEWLIVDPCISSQWPGFEATITLGETRYAIRLENPTQANRGIQHAQLDERS
LDCTNGWVRLALDEGQHQVVLRL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory