Comparing GFF3953 FitnessBrowser__Marino:GFF3953 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3a2qA Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
38% identity, 97% coverage: 11:495/499 of query aligns to 3:480/482 of 3a2qA
3h0mA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 96% coverage: 16:495/499 of query aligns to 8:475/478 of 3h0mA
3h0lA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 96% coverage: 16:495/499 of query aligns to 8:475/478 of 3h0lA
4yjiA The crystal structure of a bacterial aryl acylamidase belonging to the amidase signature (as) enzymes family (see paper)
28% identity, 96% coverage: 15:493/499 of query aligns to 8:483/490 of 4yjiA
6diiH Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
28% identity, 87% coverage: 56:487/499 of query aligns to 181:592/616 of 6diiH
Sites not aligning to the query:
Q7XJJ7 Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
28% identity, 87% coverage: 56:487/499 of query aligns to 181:592/607 of Q7XJJ7
8ey9B Structure of arabidopsis fatty acid amide hydrolase mutant s305a in complex with 9-hydroxy-10,12-octadecadienoyl-ethanolamide
28% identity, 87% coverage: 56:487/499 of query aligns to 181:592/605 of 8ey9B
Sites not aligning to the query:
8ey1D Structure of arabidopsis fatty acid amide hydrolase mutant s305a in complex with n-(3-oxododecanoyl)-l-homoserine lactone
28% identity, 87% coverage: 56:487/499 of query aligns to 181:592/605 of 8ey1D
3kfuE Crystal structure of the transamidosome (see paper)
32% identity, 93% coverage: 22:486/499 of query aligns to 9:457/468 of 3kfuE
2f2aA Structure of tRNA-dependent amidotransferase gatcab complexed with gln (see paper)
28% identity, 86% coverage: 66:495/499 of query aligns to 68:485/485 of 2f2aA