Comparing GFF4052 FitnessBrowser__psRCH2:GFF4052 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3ab9A Crystal structure of lipoylated e. Coli h-protein (reduced form) (see paper)
37% identity, 70% coverage: 7:114/154 of query aligns to 1:107/127 of 3ab9A
1htpA Refined structures at 2 angstroms and 2.2 angstroms of the two forms of the h-protein, a lipoamide-containing protein of the glycine decarboxylase complex (see paper)
38% identity, 67% coverage: 10:112/154 of query aligns to 5:105/131 of 1htpA
Sites not aligning to the query:
1hpcB Refined structures at 2 angstroms and 2.2 angstroms of the two forms of the h-protein, a lipoamide-containing protein of the glycine decarboxylase (see paper)
38% identity, 67% coverage: 10:112/154 of query aligns to 5:105/131 of 1hpcB
1hpcA Refined structures at 2 angstroms and 2.2 angstroms of the two forms of the h-protein, a lipoamide-containing protein of the glycine decarboxylase (see paper)
38% identity, 67% coverage: 10:112/154 of query aligns to 5:105/131 of 1hpcA
1dxmA Reduced form of the h protein from glycine decarboxylase complex (see paper)
38% identity, 67% coverage: 10:112/154 of query aligns to 5:105/131 of 1dxmA
Sites not aligning to the query:
P16048 Glycine cleavage system H protein, mitochondrial from Pisum sativum (Garden pea) (Lathyrus oleraceus) (see paper)
38% identity, 67% coverage: 10:112/154 of query aligns to 39:139/165 of P16048
Q5SKW9 Glycine cleavage system H protein from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
36% identity, 84% coverage: 6:134/154 of query aligns to 1:127/128 of Q5SKW9
P23434 Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens (Human) (see 4 papers)
36% identity, 65% coverage: 11:110/154 of query aligns to 49:147/173 of P23434
Sites not aligning to the query:
P20821 Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus (Bovine) (see 3 papers)
35% identity, 65% coverage: 11:110/154 of query aligns to 49:147/173 of P20821
Sites not aligning to the query:
P11183 Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus (Chicken) (see paper)
33% identity, 67% coverage: 11:113/154 of query aligns to 41:141/164 of P11183
Sites not aligning to the query:
Q9HDV9 Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
25% identity, 72% coverage: 1:111/154 of query aligns to 34:142/169 of Q9HDV9
>GFF4052 FitnessBrowser__psRCH2:GFF4052
MNVQGLDFPDALRYAPEHSLWLREEVDGSVTLGLTAYGCALYGQIFAFTPKRVGARIERE
RSFGVVEFAKAASSARSPLAGELLAVNEALLERPALINQDCYGDGWLVRLRPEDWGAVRE
EFPLGKAAEAAIAERMRLDNFDPANAHVQALQWK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory