SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF4170 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

6ztlAP coli 70S-RNAP expressome complex in collided state bound to NusG (see paper)
98% identity, 100% coverage: 1:82/82 of query aligns to 1:82/82 of 6ztlAP

query
sites
6ztlAP
M
|
M
V
 
V
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
 
H
G
|
G
A
 
A
K
|
K
K
|
K
R
|
R
P
 
P
F
|
F
Y
 
Y
Q
 
Q
V
 
V
V
 
V
V
 
V
T
 
A
D
 
D
S
|
S
R
|
R
N
 
N
A
 
A
R
|
R
N
 
N
G
|
G
R
|
R
F
 
F
I
 
I
E
|
E
R
|
R
V
|
V
G
 
G
F
|
F
F
 
F
N
 
N
P
 
P
I
|
I
A
 
A
S
 
S
E
 
E
K
 
K
E
 
E
E
 
E
G
 
G
T
 
T
R
|
R
L
 
L
D
 
D
L
 
L
D
 
D
R
 
R
I
 
I
A
 
A
H
 
H
W
 
W
V
 
V
G
 
G
Q
|
Q
G
|
G
A
 
A
T
 
T
I
 
I
S
|
S
D
 
D
R
|
R
V
 
V
A
 
A
A
 
A
L
 
L
I
 
I
K
 
K
E
 
E
V
 
V
K
 
N
K
 
K
A
 
A
A
 
A

4a2iP Cryo-electron microscopy structure of the 30s subunit in complex with the yjeq biogenesis factor (see paper)
98% identity, 100% coverage: 1:82/82 of query aligns to 1:82/82 of 4a2iP

query
sites
4a2iP
M
|
M
V
 
V
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
|
H
G
 
G
A
 
A
K
|
K
K
|
K
R
|
R
P
 
P
F
|
F
Y
|
Y
Q
 
Q
V
 
V
V
 
V
V
 
V
T
 
A
D
|
D
S
|
S
R
|
R
N
 
N
A
 
A
R
|
R
N
 
N
G
|
G
R
|
R
F
 
F
I
 
I
E
 
E
R
|
R
V
 
V
G
 
G
F
 
F
F
 
F
N
 
N
P
|
P
I
 
I
A
 
A
S
 
S
E
 
E
K
 
K
E
 
E
E
 
E
G
 
G
T
 
T
R
 
R
L
 
L
D
 
D
L
 
L
D
 
D
R
 
R
I
 
I
A
 
A
H
 
H
W
|
W
V
 
V
G
 
G
Q
 
Q
G
|
G
A
 
A
T
 
T
I
 
I
S
|
S
D
 
D
R
|
R
V
 
V
A
 
A
A
 
A
L
 
L
I
 
I
K
 
K
E
|
E
V
 
V
K
 
N
K
 
K
A
 
A
A
 
A

7m4up A. Baumannii ribosome-eravacycline complex: 30s (see paper)
72% identity, 99% coverage: 1:81/82 of query aligns to 1:81/83 of 7m4up

query
sites
7m4up
M
|
M
V
|
V
T
 
V
I
 
I
R
|
R
L
|
L
A
 
A
R
 
R
H
 
G
G
|
G
A
 
A
K
|
K
K
|
K
R
|
R
P
 
P
F
|
F
Y
|
Y
Q
 
Q
V
 
I
V
 
V
V
 
V
T
 
T
D
 
D
S
 
S
R
|
R
N
 
N
A
 
A
R
|
R
N
 
D
G
|
G
R
|
R
F
 
F
I
 
I
E
 
E
R
|
R
V
 
I
G
 
G
F
 
F
F
 
F
N
 
N
P
 
P
I
 
T
A
 
A
S
x
Q
E
 
G
K
x
Q
E
 
A
E
 
E
G
 
K
T
 
L
R
 
R
L
 
L
D
 
D
L
 
A
D
 
D
R
 
R
I
 
F
A
 
A
H
 
H
W
 
W
V
 
V
G
 
S
Q
|
Q
G
|
G
A
 
A
T
x
Q
I
 
P
S
|
S
D
 
E
R
|
R
V
 
V
A
 
A
A
 
S
L
 
L
I
 
A
K
 
A
E
 
Q
V
 
A
K
 
K
K
 
K
A
 
A

7unrp 30S ribosomal protein S6
60% identity, 99% coverage: 1:81/82 of query aligns to 1:81/81 of 7unrp

query
sites
7unrp
M
|
M
V
 
V
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
 
G
G
|
G
A
 
S
K
|
K
K
|
K
R
|
R
P
 
P
F
 
F
Y
|
Y
Q
 
H
V
 
L
V
 
T
V
 
V
T
 
T
D
x
N
S
 
S
R
|
R
N
 
N
A
 
A
R
|
R
N
 
D
G
|
G
R
|
R
F
 
F
I
 
V
E
 
E
R
 
R
V
 
I
G
 
G
F
 
F
F
 
F
N
 
N
P
 
P
I
 
V
A
 
A
S
 
T
E
 
G
K
 
G
E
|
E
E
 
V
G
 
R
T
 
L
R
 
S
L
 
V
D
 
D
L
 
Q
D
 
E
R
 
R
I
 
A
A
 
T
H
 
Y
W
 
W
V
 
L
G
 
G
Q
|
Q
G
|
G
A
 
A
T
 
Q
I
 
P
S
 
S
D
 
E
R
|
R
V
 
V
A
 
A
A
x
Q
L
 
L
I
 
L
K
 
K
E
 
D
V
 
A
K
 
A
K
 
K
A
 
A

8rd8Pj Small ribosomal subunit protein uS5 (see paper)
60% identity, 99% coverage: 1:81/82 of query aligns to 1:81/81 of 8rd8Pj

query
sites
8rd8Pj
M
|
M
V
|
V
T
 
V
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
 
G
G
|
G
A
 
A
K
|
K
K
|
K
R
|
R
P
 
P
F
|
F
Y
|
Y
Q
|
Q
V
 
V
V
 
V
V
 
V
T
 
A
D
|
D
S
x
Q
R
|
R
N
x
R
A
 
A
R
|
R
N
 
D
G
|
G
R
|
R
F
 
Y
I
 
I
E
 
E
R
 
N
V
 
I
G
 
G
F
|
F
F
 
F
N
 
N
P
 
P
I
 
L
A
 
A
S
x
K
E
 
E
K
 
S
E
|
E
E
 
E
G
 
A
T
 
V
R
|
R
L
 
L
D
 
N
L
 
M
D
 
E
R
 
A
I
 
Y
A
 
H
H
 
A
W
 
W
V
 
I
G
 
A
Q
x
K
G
|
G
A
 
A
T
x
Q
I
 
P
S
|
S
D
 
D
R
|
R
V
 
V
A
 
A
A
x
S
L
 
L
I
 
V
K
x
R
E
 
A
V
 
Y
K
 
N
K
 
K
A
 
A

8fmwP 30S ribosomal protein S10 (see paper)
46% identity, 90% coverage: 2:75/82 of query aligns to 3:74/83 of 8fmwP

query
sites
8fmwP
V
|
V
T
x
K
I
 
I
R
|
R
L
 
L
A
 
K
R
 
R
H
x
M
G
|
G
A
 
A
K
|
K
K
|
K
R
|
R
P
 
P
F
x
Y
Y
|
Y
Q
x
R
V
 
V
V
 
V
V
 
V
T
 
M
D
x
N
S
 
S
R
x
T
N
 
S
A
x
P
R
|
R
N
 
D
G
|
G
R
|
R
F
 
A
I
 
I
E
 
E
R
 
E
V
 
L
G
 
G
F
 
Y
F
 
Y
N
 
H
P
 
P
I
 
V
A
 
-
S
 
-
E
|
E
K
 
K
E
 
Q
E
 
N
G
 
Q
T
 
I
R
 
K
L
 
I
D
 
K
L
 
E
D
 
D
R
 
R
I
 
M
A
 
K
H
 
D
W
 
W
V
 
I
G
 
S
Q
x
K
G
|
G
A
 
A
T
x
I
I
 
L
S
 
S
D
 
D
R
 
T
V
 
V
A
 
K
A
x
M
L
 
L
I
 
L

Sites not aligning to the query:

3j9wAP 30S ribosomal protein uS9 (see paper)
50% identity, 90% coverage: 2:75/82 of query aligns to 2:73/89 of 3j9wAP

query
sites
3j9wAP
V
 
V
T
 
K
I
 
I
R
 
R
L
|
L
A
 
K
R
 
R
H
 
M
G
|
G
A
 
A
K
|
K
K
 
K
R
 
S
P
 
P
F
 
F
Y
 
Y
Q
 
R
V
 
I
V
 
V
V
 
V
T
 
A
D
 
D
S
 
S
R
|
R
N
 
S
A
 
P
R
 
R
N
 
D
G
 
G
R
 
R
F
 
F
I
 
I
E
 
E
R
 
T
V
 
V
G
 
G
F
 
T
F
 
Y
N
 
N
P
 
P
I
 
V
A
 
A
S
 
K
E
 
P
K
 
A
E
 
E
E
 
-
G
 
-
T
 
V
R
 
K
L
 
I
D
 
D
L
 
E
D
 
E
R
 
L
I
 
A
A
 
L
H
 
K
W
 
W
V
 
L
G
 
Q
Q
x
T
G
 
G
A
 
A
T
 
K
I
 
P
S
 
S
D
 
D
R
 
T
V
 
V
A
 
R
A
 
N
L
 
L
I
 
F

Sites not aligning to the query:

5myjAP of 70S ribosome from Lactococcus lactis (see paper)
46% identity, 90% coverage: 2:75/82 of query aligns to 2:73/86 of 5myjAP

query
sites
5myjAP
V
 
V
T
x
K
I
 
I
R
|
R
L
|
L
A
x
T
R
|
R
H
x
M
G
 
G
A
x
S
K
|
K
K
|
K
R
x
K
P
 
P
F
|
F
Y
|
Y
Q
x
R
V
 
I
V
 
N
V
 
V
T
 
A
D
|
D
S
 
S
R
|
R
N
 
A
A
 
P
R
|
R
N
 
D
G
|
G
R
x
K
F
|
F
I
|
I
E
 
E
R
 
T
V
 
V
G
 
G
F
x
T
F
 
Y
N
 
N
P
 
P
I
x
L
A
 
V
S
 
T
E
 
E
K
 
N
E
 
Q
E
 
-
G
 
-
T
 
V
R
 
T
L
 
L
D
 
K
L
 
E
D
 
E
R
 
R
I
 
V
A
 
L
H
 
E
W
|
W
V
 
L
G
x
S
Q
x
N
G
|
G
A
 
A
T
 
Q
I
 
P
S
 
S
D
 
D
R
x
T
V
 
V
A
x
R
A
x
N
L
 
L
I
 
L

Sites not aligning to the query:

7pntM 28S ribosomal protein S11, mitochondrial (see paper)
43% identity, 90% coverage: 2:75/82 of query aligns to 8:82/126 of 7pntM

query
sites
7pntM
V
 
L
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
 
L
H
 
G
G
 
G
A
 
C
K
x
T
K
x
N
R
 
R
P
 
P
F
 
F
Y
|
Y
Q
 
R
V
 
I
V
 
V
V
 
A
T
 
A
D
x
H
S
x
N
R
x
K
N
 
C
A
 
P
R
|
R
N
 
D
G
|
G
R
|
R
F
|
F
I
 
V
E
 
E
R
 
Q
V
 
L
G
 
G
F
 
S
F
 
Y
N
 
D
P
 
P
I
 
L
A
 
P
-
 
N
S
 
S
E
 
H
K
 
G
E
 
E
E
 
K
G
 
L
T
 
V
R
 
A
L
 
L
D
 
N
L
 
L
D
 
D
R
 
R
I
 
I
A
 
R
H
 
H
W
|
W
V
 
I
G
 
G
Q
x
C
G
|
G
A
 
A
T
x
H
I
 
L
S
|
S
D
 
K
R
x
P
V
 
M
A
 
E
A
 
K
L
 
L
I
 
L

Sites not aligning to the query:

6o8wp 30S ribosomal protein S10 (see paper)
47% identity, 90% coverage: 2:75/82 of query aligns to 2:73/89 of 6o8wp

query
sites
6o8wp
V
 
V
T
x
K
I
 
I
R
|
R
L
|
L
A
 
K
R
|
R
H
x
M
G
 
G
A
x
S
K
|
K
K
 
K
R
 
S
P
 
P
F
 
F
Y
 
Y
Q
x
R
V
 
I
V
 
V
V
 
V
T
 
A
D
|
D
S
 
S
R
|
R
N
 
S
A
x
P
R
|
R
N
 
D
G
 
G
R
|
R
F
 
F
I
 
I
E
 
E
R
 
T
V
 
V
G
 
G
F
 
T
F
 
Y
N
 
N
P
|
P
I
x
L
A
x
K
S
x
D
E
 
P
K
 
A
E
 
E
E
 
V
G
 
V
T
 
L
R
 
K
L
 
E
D
 
D
L
 
L
D
 
-
R
 
-
I
 
V
A
 
L
H
 
D
W
 
W
V
 
L
G
 
S
Q
 
K
G
 
G
A
 
A
T
 
Q
I
 
P
S
|
S
D
 
D
R
x
T
V
 
V
A
x
R
A
x
N
L
 
I
I
 
L

Sites not aligning to the query:

8oisAM 28S ribosomal protein S35, mitochondrial (see paper)
43% identity, 90% coverage: 2:75/82 of query aligns to 8:82/119 of 8oisAM

query
sites
8oisAM
V
 
L
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
 
L
H
 
G
G
|
G
A
x
C
K
x
T
K
x
N
R
 
R
P
 
P
F
 
F
Y
|
Y
Q
 
R
V
 
I
V
 
V
V
 
A
T
 
A
D
x
H
S
x
N
R
x
K
N
 
C
A
x
P
R
|
R
N
 
D
G
 
G
R
|
R
F
|
F
I
 
V
E
 
E
R
 
Q
V
 
L
G
 
G
F
 
S
F
 
Y
N
 
D
P
 
P
I
 
L
A
 
P
-
 
N
S
 
S
E
 
H
K
 
G
E
 
E
E
 
K
G
 
L
T
 
V
R
 
A
L
 
L
D
 
N
L
 
L
D
 
D
R
 
R
I
 
I
A
 
R
H
 
H
W
|
W
V
 
I
G
 
G
Q
x
C
G
|
G
A
 
A
T
x
H
I
 
L
S
|
S
D
x
K
R
x
P
V
 
M
A
 
E
A
 
K
L
 
L
I
 
L

Sites not aligning to the query:

7p2eM 28S ribosomal protein S9, mitochondrial (see paper)
43% identity, 90% coverage: 2:75/82 of query aligns to 8:82/119 of 7p2eM

query
sites
7p2eM
V
 
L
T
 
T
I
 
I
R
|
R
L
|
L
A
 
A
R
 
L
H
 
G
G
 
G
A
x
C
K
x
T
K
x
N
R
|
R
P
 
P
F
 
F
Y
|
Y
Q
 
R
V
 
I
V
 
V
V
 
A
T
 
A
D
x
H
S
x
N
R
x
K
N
 
C
A
x
P
R
|
R
N
 
D
G
|
G
R
|
R
F
|
F
I
 
V
E
 
E
R
 
Q
V
 
L
G
 
G
F
 
S
F
 
Y
N
 
D
P
 
P
I
 
L
A
 
P
-
 
N
S
 
S
E
 
H
K
 
G
E
 
E
E
 
K
G
 
L
T
 
V
R
 
A
L
 
L
D
 
N
L
 
L
D
 
D
R
 
R
I
 
I
A
 
R
H
 
H
W
|
W
V
 
I
G
 
G
Q
x
C
G
|
G
A
 
A
T
x
H
I
 
L
S
|
S
D
 
K
R
x
P
V
 
M
A
 
E
A
 
K
L
 
L
I
 
L

Sites not aligning to the query:

6xywBo At4g35490 (see paper)
44% identity, 91% coverage: 1:75/82 of query aligns to 1:76/99 of 6xywBo

query
sites
6xywBo
M
 
V
V
 
V
T
x
R
I
 
I
R
|
R
L
|
L
A
 
S
R
|
R
H
x
F
G
 
G
A
x
C
K
|
K
K
x
N
R
|
R
P
 
P
F
|
F
Y
x
F
Q
x
R
V
 
V
V
 
M
V
 
A
T
 
A
D
|
D
S
|
S
R
|
R
N
 
S
A
 
P
R
|
R
N
 
D
G
 
G
R
 
K
F
x
H
I
 
L
E
 
E
R
 
V
V
 
L
G
 
G
F
x
Y
F
 
F
N
 
N
P
 
P
I
 
L
A
x
P
S
 
G
E
 
Q
K
 
-
E
 
D
E
 
G
G
 
G
T
 
K
R
|
R
L
 
M
D
 
G
L
 
L
-
 
K
-
 
F
D
 
D
R
 
R
I
 
I
A
 
K
H
 
Y
W
 
W
V
 
L
G
 
S
Q
x
V
G
|
G
A
 
A
T
x
Q
I
 
P
S
 
S
D
 
D
R
x
P
V
 
V
A
 
Q
A
x
R
L
 
L
I
 
L

Sites not aligning to the query:

1i94P Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3 (see paper)
38% identity, 94% coverage: 1:77/82 of query aligns to 1:76/88 of 1i94P

query
sites
1i94P
M
 
M
V
 
V
T
 
K
I
 
I
R
 
R
L
|
L
A
 
A
R
 
R
H
x
F
G
|
G
A
x
S
K
|
K
K
 
H
R
 
N
P
 
P
F
x
H
Y
 
Y
Q
 
R
V
 
I
V
 
V
V
 
V
T
 
T
D
 
D
S
x
A
R
|
R
N
 
R
A
x
K
R
|
R
N
x
D
G
|
G
R
x
K
F
 
Y
I
 
I
E
 
E
R
 
K
V
 
I
G
 
G
F
 
Y
F
 
Y
N
 
D
P
|
P
I
x
R
A
 
K
S
 
T
E
 
T
K
 
-
E
 
P
E
 
D
G
 
W
T
 
L
R
 
K
L
 
V
D
 
D
L
 
V
D
 
E
R
 
R
I
 
A
A
 
R
H
 
Y
W
 
W
V
 
L
G
 
S
Q
x
V
G
|
G
A
 
A
T
 
Q
I
 
P
S
 
T
D
 
D
R
 
T
V
 
A
A
 
R
A
 
R
L
 
L
I
 
L
K
 
R
E
 
Q

Sites not aligning to the query:

1hnwP Structure of the thermus thermophilus 30s ribosomal subunit in complex with tetracycline (see paper)
38% identity, 94% coverage: 1:77/82 of query aligns to 1:76/88 of 1hnwP

query
sites
1hnwP
M
|
M
V
 
V
T
x
K
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
x
F
G
|
G
A
 
S
K
|
K
K
x
H
R
x
N
P
 
P
F
x
H
Y
|
Y
Q
x
R
V
 
I
V
 
V
V
 
V
T
 
T
D
|
D
S
 
A
R
|
R
N
 
R
A
x
K
R
|
R
N
 
D
G
 
G
R
x
K
F
 
Y
I
 
I
E
 
E
R
x
K
V
 
I
G
 
G
F
 
Y
F
 
Y
N
 
D
P
|
P
I
x
R
A
x
K
S
x
T
E
x
T
K
 
-
E
 
P
E
 
D
G
 
W
T
 
L
R
 
K
L
 
V
D
 
D
L
 
V
D
 
E
R
 
R
I
 
A
A
 
R
H
 
Y
W
|
W
V
 
L
G
 
S
Q
x
V
G
|
G
A
 
A
T
x
Q
I
 
P
S
x
T
D
 
D
R
x
T
V
 
A
A
 
R
A
x
R
L
 
L
I
 
L
K
x
R
E
 
Q

Sites not aligning to the query:

7nhnq 50S ribosomal protein L31 type B (see paper)
45% identity, 90% coverage: 2:75/82 of query aligns to 2:73/88 of 7nhnq

query
sites
7nhnq
V
|
V
T
x
K
I
 
I
R
|
R
L
|
L
A
 
K
R
|
R
H
x
I
G
 
G
A
 
S
K
|
K
K
|
K
R
 
K
P
 
P
F
|
F
Y
|
Y
Q
x
R
V
 
I
V
 
V
V
 
V
T
 
A
D
|
D
S
|
S
R
|
R
N
 
F
A
 
P
R
|
R
N
 
D
G
|
G
R
|
R
F
 
S
I
 
I
E
 
E
R
 
T
V
 
I
G
 
G
F
 
T
F
 
Y
N
 
N
P
 
P
I
x
L
A
 
L
S
 
D
E
 
P
K
 
V
E
 
E
E
 
-
G
 
-
T
 
V
R
 
K
L
 
I
D
 
D
L
 
E
D
 
E
R
 
A
I
 
T
A
 
L
H
 
K
W
 
W
V
 
M
G
 
H
Q
x
N
G
|
G
A
 
A
T
x
K
I
 
P
S
|
S
D
 
D
R
x
T
V
 
V
A
x
R
A
x
N
L
 
L
I
 
L

Sites not aligning to the query:

7bgdp Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (body only)
39% identity, 90% coverage: 2:75/82 of query aligns to 2:74/90 of 7bgdp

query
sites
7bgdp
V
 
V
T
x
K
I
 
I
R
|
R
L
|
L
A
 
T
R
|
R
H
 
L
G
|
G
A
 
S
K
|
K
K
x
R
R
 
N
P
 
P
F
|
F
Y
|
Y
Q
x
R
V
 
I
V
 
V
V
 
V
T
 
A
D
|
D
S
 
A
R
|
R
N
 
S
A
x
P
R
|
R
N
 
D
G
|
G
R
|
R
F
 
I
I
 
I
E
 
E
R
 
Q
V
 
I
G
 
G
F
 
T
F
 
Y
N
 
N
P
|
P
I
 
T
A
 
S
S
 
A
E
 
N
K
 
A
E
 
P
E
 
E
G
 
-
T
 
I
R
 
K
L
 
V
D
 
D
L
 
E
D
 
A
R
 
L
I
 
A
A
 
L
H
 
K
W
|
W
V
 
L
G
 
N
Q
x
D
G
|
G
A
 
A
T
x
K
I
 
P
S
x
T
D
 
D
R
x
T
V
 
V
A
x
H
A
x
N
L
 
I
I
 
L

Sites not aligning to the query:

8om2P 37S ribosomal protein S9, mitochondrial (see paper)
39% identity, 94% coverage: 1:77/82 of query aligns to 4:91/120 of 8om2P

query
sites
8om2P
M
x
L
V
|
V
T
x
R
I
 
I
R
|
R
L
|
L
A
 
A
R
|
R
H
 
F
G
 
G
A
x
R
K
|
K
K
x
N
R
 
S
P
 
P
F
 
V
Y
|
Y
Q
 
N
V
 
I
V
 
V
V
 
V
T
 
A
D
x
N
S
 
S
R
|
R
N
 
K
A
 
A
R
|
R
N
 
D
G
x
A
R
x
K
F
 
P
I
 
I
E
 
E
R
 
V
V
 
L
G
 
G
F
 
T
F
 
Y
N
 
V
P
 
P
I
 
V
A
x
P
S
 
S
-
 
P
-
 
V
-
 
T
-
x
K
-
x
R
E
 
E
K
 
L
E
 
K
E
 
R
G
 
G
-
 
V
-
 
V
-
 
P
-
 
I
-
x
K
-
 
D
T
 
V
R
 
K
L
 
L
D
 
D
L
 
F
D
 
D
R
 
R
I
 
T
A
 
K
H
 
Y
W
 
W
V
 
I
G
 
G
Q
 
V
G
|
G
A
 
A
T
x
Q
I
 
P
S
|
S
D
 
E
R
x
T
V
 
V
A
 
T
A
x
K
L
 
L
I
 
L
K
 
R
E
 
K

Sites not aligning to the query:

8crxP 30S ribosomal protein S17 (see paper)
42% identity, 89% coverage: 4:76/82 of query aligns to 4:74/128 of 8crxP

query
sites
8crxP
I
 
I
R
|
R
L
|
L
A
 
K
R
 
R
H
 
L
G
|
G
A
x
K
K
x
I
K
x
R
R
 
T
P
 
P
F
x
H
Y
|
Y
Q
x
R
V
 
V
V
 
V
V
 
V
T
 
M
D
|
D
S
|
S
R
|
R
N
 
A
A
x
K
R
|
R
N
 
D
G
 
G
R
|
R
F
 
A
I
|
I
E
 
E
R
 
E
V
 
I
G
 
G
F
 
Q
F
 
Y
N
x
H
P
 
P
I
x
K
A
 
A
S
 
D
E
 
P
K
x
S
E
 
V
E
 
-
G
 
-
T
x
I
R
 
V
L
 
I
D
 
D
L
 
S
D
 
E
R
 
R
I
 
V
A
 
Q
H
 
Y
W
 
W
V
 
L
G
 
G
Q
x
V
G
|
G
A
 
A
T
x
Q
I
 
P
S
x
T
D
 
E
R
 
A
V
 
V
A
 
V
A
 
A
L
 
L
I
 
L
K
 
K

Sites not aligning to the query:

6yw5PP structure of the small subunit of the mitoribosome from Neurospora crassa (see paper)
34% identity, 95% coverage: 1:78/82 of query aligns to 1:86/98 of 6yw5PP

query
sites
6yw5PP
M
 
V
V
x
L
T
x
K
I
 
L
R
|
R
L
|
L
A
 
A
R
|
R
H
 
F
G
 
G
A
x
R
K
x
T
K
x
N
R
 
A
P
 
P
F
 
F
Y
|
Y
Q
 
N
V
 
I
V
 
V
V
 
V
T
 
A
D
x
H
S
x
A
R
|
R
N
 
T
A
|
A
R
|
R
N
 
N
G
 
S
R
x
K
F
 
P
I
 
L
E
 
E
R
 
V
V
 
I
G
 
G
F
 
T
F
 
Y
N
 
D
P
|
P
I
 
V
A
x
P
S
 
K
E
 
K
K
 
D
E
 
T
E
 
Y
G
 
D
T
 
T
-
 
T
-
 
G
-
 
K
-
 
L
-
 
H
-
x
K
-
 
D
-
 
I
R
 
K
L
 
L
D
 
D
L
 
V
D
 
T
R
 
R
I
 
A
A
 
K
H
 
Y
W
 
W
V
 
I
G
 
G
Q
x
V
G
|
G
A
 
A
T
x
Q
I
 
P
S
x
T
D
 
D
R
x
T
V
 
V
A
 
W
A
x
R
L
 
L
I
 
L
K
 
S
E
 
L
V
 
V

Sites not aligning to the query:

Query Sequence

>GFF4170
MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW
VGQGATISDRVAALIKEVKKAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory