SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF5095 FitnessBrowser__WCS417:GFF5095 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
30% identity, 80% coverage: 20:210/239 of query aligns to 16:197/215 of 4ymtC

query
sites
4ymtC
L
 
I
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S
G
 
G
A
 
L
L
 
I
V
 
M
T
 
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L
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K
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L
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F
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A
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T
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I
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G
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L
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M
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I
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A
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L
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M
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K
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M
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I
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P
L
 
I
R
 
K
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L
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A
T
 
S
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S
F
 
Y
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I
T
 
E
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V
F
 
I
R
 
R
G
 
G
L
 
T
P
|
P
E
x
L
L
 
L
L
 
V
T
 
Q
L
 
L
L
 
L
I
 
L
I
 
I
Y
 
Y
Y
 
N
G
 
G
C
 
L
Q
 
M
I
 
-
A
 
-
A
 
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Q
 
-
R
 
-
M
 
-
L
 
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-
A
 
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-
G
 
-
Y
 
-
Q
 
Q
G
 
F
E
 
G
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N
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I
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P
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A
F
 
F
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T
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A
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G
M
 
V
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S
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A
F
 
L
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A
L
 
I
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N
F
 
S
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S
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A
F
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Y
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A
E
 
E
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I
W
 
I
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A
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G
F
 
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K
 
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A
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D
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P
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G
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Q
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A
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A
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R
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S
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L
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G
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M
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T
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H
G
 
A
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M
T
 
A
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M
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Y
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P
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Q
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A
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K
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N
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I
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L
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A
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G
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N
N
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F
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x
M
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L
K
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K
D
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A
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S
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V
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I
S
 
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D
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A
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D
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Y
L
 
I
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I
Y
 
I
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A
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A
A
 
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Y
F
 
F

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
30% identity, 80% coverage: 20:210/239 of query aligns to 16:197/214 of 4ymwC

query
sites
4ymwC
L
 
I
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L
T
 
K
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L
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F
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L
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A
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T
L
 
I
G
 
G
L
 
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L
L
 
M
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G
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L
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F
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I
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A
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L
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M
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L
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L
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L
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L
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I
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Y
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N
G
 
G
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-
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A
F
 
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A
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G
M
 
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A
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A
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I
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E
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Y
L
 
I
F
 
I
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I
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A
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A
A
 
I
C
 
Y
F
 
F

Query Sequence

>GFF5095 FitnessBrowser__WCS417:GFF5095
MLEQLSLLSFANGGWGSALLAGALVTITLALACIPLGLPLGLLVALAARSKRRWLRTGAT
VFSTVFRGLPELLTLLIIYYGCQIAAQRMLAAMGYQGEVTINTFVAAMIAFSLVFAAFSS
EVWLSAFKSLSKGQFEAATMLGLPKGTTLRKVVLPQLTRIALPGLSNNWLSLLKDTSLVS
TISLVDLMRQTSLAVSVTKEPMLFYAVACFGYLFFSALSGRVFNFLERYFSRHQLSAKP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory