Comparing GFF72 FitnessBrowser__psRCH2:GFF72 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
6z1mA Structure of an ancestral glycosidase (family 1) bound to heme (see paper)
23% identity, 84% coverage: 32:354/384 of query aligns to 50:406/423 of 6z1mA
Sites not aligning to the query:
>GFF72 FitnessBrowser__psRCH2:GFF72
MHHPSLFKSFFLGGFECSNHRRSDGRRLDLIAATGHDRWAAHDYAELHRYGLRSVRDGLR
WHLIERQPGQYDWSSFLPMLQAAQRQGTQVIWDLCHYGWPDDIDIWRPQFVERFARYAAA
AAQLIKDETGEVPFYAPLNEISFWAWAGGDEAYFNPMARGRGFELKHQLVRATIAAMQAI
RAVEPRARFVQVDPAIHVVAANDRPGPQRDAERFRQSQFEAWDMLCGEQWPGLGGAPEYL
DVLGINYYSNNQWYHGDGRTIERDNPDYRPFKGILREIHQRYQRPLLIAETGAEGDVRGD
WLRYVSEQAGLAMQAGVPVEGICLYPVLDYPGWTDERHCPVGLLGFPDEIGKRCVHEGLA
DELRLQQMRFSQSSPAPRFAEATP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory