Comparing GFF772 FitnessBrowser__Phaeo:GFF772 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
27% identity, 37% coverage: 161:327/450 of query aligns to 105:261/390 of 3oo6A
Sites not aligning to the query:
>GFF772 FitnessBrowser__Phaeo:GFF772
MKRSLLAAAGVLALSAGLAQAEGALTFPVGEGEFNWESFEALKATDLSGEQVTVFGPWLG
PDQELVEKVLAYFAEATGADVRYTGSDSFEQQIVVDAEAGSAPNVAVFPQPGLVSDMAAR
GFIAPLGSETADWVRENYAAGDSWVDLSTFTGPDGNEDVFGLFYKVDVKSLVWYVPETFE
DFGYDIPQSMEELKALTDQMVADGNTPWCIGLGSGGATGWPATDWVEDMMLRTQDPGVYD
QWVSNEIPFTDPRVVNAIEEFGYFARNDDYVSGGAGAVASTDFRDSPKGLFASPPQCLMH
RQASFIPAFFPEGTEVGLDADFFYFPAYAEKDLGSPVLGAGTLWSITNDSKGARALMEFL
KSPIGHEVWMAQQGFLTPHKGVNTDVYATDTLKKMGEILLSADTFRFDASDLMPGGVGAG
SFWTGMVGYAGGTPAEEVAAEIQSSWDALK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory