SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF772 FitnessBrowser__Phaeo:GFF772 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
27% identity, 37% coverage: 161:327/450 of query aligns to 105:261/390 of 3oo6A

query
sites
3oo6A
G
 
G
L
 
H
F
 
Y
Y
 
Y
K
 
L
V
 
V
D
 
P
V
 
L
K
 
Y
S
 
N
L
x
Y
V
 
P
W
|
W
-
 
V
-
 
V
-
 
F
Y
 
Y
V
 
N
P
 
K
E
 
S
T
 
V
F
 
F
E
 
Q
D
 
S
F
 
K
G
 
G
Y
 
Y
D
 
E
I
 
V
P
 
P
Q
 
A
S
 
S
M
 
W
E
 
E
E
 
A
L
 
F
K
 
I
A
 
A
L
 
L
T
 
A
D
 
R
Q
 
K
M
 
M
V
 
Q
A
 
S
D
 
D
G
 
G
N
 
L
T
 
V
P
 
P
W
 
-
C
 
-
I
 
-
G
 
-
L
 
L
G
 
A
S
 
F
G
 
A
G
 
D
A
 
K
T
 
D
G
 
G
W
|
W
P
 
P
A
 
A
T
 
L
D
 
G
W
 
T
V
 
F
E
 
D
D
 
I
M
 
L
M
 
N
L
 
L
R
 
R
T
 
I
Q
 
N
D
 
G
P
 
Y
G
 
D
V
 
Y
Y
 
H
D
 
I
Q
 
K
W
 
L
V
 
M
S
 
K
N
 
H
E
 
E
I
 
V
P
 
P
F
 
W
T
 
T
D
 
D
P
 
P
R
 
G
V
 
V
V
 
T
N
 
K
A
 
V
I
 
F
E
 
D
E
 
Q
F
 
W
G
 
R
Y
 
E
F
 
L
A
 
A
R
 
A
N
 
-
D
 
-
D
 
-
Y
 
Y
V
 
Q
S
 
Q
G
 
K
G
 
G
A
 
A
G
 
N
A
 
G
V
 
R
A
 
T
S
 
-
T
 
-
D
 
-
F
 
W
R
 
Q
D
 
D
S
 
A
P
 
A
K
 
K
G
 
A
L
 
L
-
 
E
-
 
N
-
 
K
-
 
Q
-
 
A
-
 
G
-
 
M
-
 
M
F
 
F
A
 
Q
S
 
G
P
 
S
P
 
N
Q
 
Q
C
 
V
L
 
A
M
 
A
H
 
N
R
 
Y
Q
 
S
A
 
A
S
 
K
F
 
N
I
 
L
P
 
P
A
 
-
F
 
-
F
 
-
P
 
-
E
 
-
G
 
-
T
 
-
E
 
-
V
 
-
G
 
-
L
 
-
D
 
D
A
 
L
D
 
D
F
 
F
F
 
F
Y
 
V
F
 
F
P
 
P
A
 
A

Sites not aligning to the query:

Query Sequence

>GFF772 FitnessBrowser__Phaeo:GFF772
MKRSLLAAAGVLALSAGLAQAEGALTFPVGEGEFNWESFEALKATDLSGEQVTVFGPWLG
PDQELVEKVLAYFAEATGADVRYTGSDSFEQQIVVDAEAGSAPNVAVFPQPGLVSDMAAR
GFIAPLGSETADWVRENYAAGDSWVDLSTFTGPDGNEDVFGLFYKVDVKSLVWYVPETFE
DFGYDIPQSMEELKALTDQMVADGNTPWCIGLGSGGATGWPATDWVEDMMLRTQDPGVYD
QWVSNEIPFTDPRVVNAIEEFGYFARNDDYVSGGAGAVASTDFRDSPKGLFASPPQCLMH
RQASFIPAFFPEGTEVGLDADFFYFPAYAEKDLGSPVLGAGTLWSITNDSKGARALMEFL
KSPIGHEVWMAQQGFLTPHKGVNTDVYATDTLKKMGEILLSADTFRFDASDLMPGGVGAG
SFWTGMVGYAGGTPAEEVAAEIQSSWDALK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory