SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF854 FitnessBrowser__WCS417:GFF854 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
25% identity, 94% coverage: 3:147/154 of query aligns to 501:646/650 of O31645

query
sites
O31645
R
 
K
L
 
L
E
 
T
T
 
D
I
 
I
L
 
I
T
 
S
P
 
P
G
 
E
R
 
L
S
 
I
L
 
E
V
 
P
N
 
N
A
 
L
P
 
S
G
 
G
G
 
E
S
 
T
K
 
S
K
 
D
K
 
D
A
 
I
L
 
I
E
 
D
Q
 
E
I
 
L
A
 
I
N
 
Q
L
 
K
I
 
L
S
 
S
R
 
R
E
 
R
V
 
G
P
 
A
E
 
L
L
 
L
E
 
S
M
 
E
Q
 
S
D
 
G
V
 
F
Y
 
K
E
 
Q
A
 
A
L
 
I
I
 
L
A
 
N
R
 
R
E
 
E
K
 
Q
L
 
Q
G
 
G
S
 
T
T
 
T
G
 
A
F
 
I
G
 
G
N
 
M
G
 
N
I
 
I
A
 
A
I
 
I
P
 
P
H
 
H
C
 
G
R
 
K
L
 
S
K
 
E
G
 
A
C
 
V
E
 
R
T
 
E
P
 
P
V
 
S
S
 
V
A
 
A
L
 
F
L
 
G
H
 
I
L
 
K
D
 
R
A
 
S
P
 
G
I
 
V
D
 
D
F
 
W
D
 
N
A
 
S
I
 
L
D
 
D
G
 
G
A
 
S
P
 
E
V
 
A
D
 
K
L
 
L
L
 
I
F
 
F
V
 
M
L
 
I
L
 
A
V
 
V
P
 
P
-
 
K
Q
 
E
A
 
S
A
 
G
T
 
G
D
 
N
A
 
Q
H
 
H
L
 
L
E
 
K
L
 
I
L
 
L
R
 
Q
Q
 
M
I
 
L
A
 
S
S
 
R
M
 
K
L
 
L
D
 
M
R
 
D
K
 
D
D
 
N
V
 
Y
R
 
R
D
 
E
K
 
R
L
 
L
R
 
L
S
 
S
A
 
V
K
 
Q
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T
N
 
T
E
 
E
A
 
E
L
 
A
Y
 
Y
Q
 
K
V
 
L
V
 
L

Sites not aligning to the query:

C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
30% identity, 66% coverage: 43:143/154 of query aligns to 37:135/143 of C0H3V2

query
sites
C0H3V2
Q
 
E
D
 
D
V
 
Y
Y
 
I
E
 
S
A
 
K
L
 
M
I
 
F
A
 
E
R
 
R
E
 
E
K
 
E
L
 
T
G
 
S
S
 
S
T
 
T
G
 
F
F
 
M
G
 
G
N
 
N
G
 
F
I
 
I
A
 
A
I
 
I
P
 
P
H
 
H
C
 
-
R
 
-
L
 
-
K
 
-
G
 
G
C
 
T
E
 
E
T
 
E
P
 
A
V
 
K
S
 
S
A
 
E
L
 
V
L
 
L
H
 
H
-
x
S
-
 
G
-
 
I
-
 
S
-
 
I
L
 
I
D
 
Q
A
 
I
P
 
P
I
 
E
D
 
G
F
 
V
D
 
E
A
 
Y
I
 
G
D
 
E
G
 
G
A
 
N
P
 
T
V
 
A
D
 
K
L
 
V
L
 
V
F
 
F
V
 
G
L
 
I
L
 
-
V
 
-
P
 
-
Q
 
A
A
 
G
A
 
K
T
 
N
D
 
N
A
 
E
H
 
H
L
 
L
E
 
D
L
 
I
L
 
L
R
 
S
Q
 
N
I
 
I
A
 
A
S
 
I
M
 
I
L
 
C
D
 
S
R
 
E
K
 
E
D
 
E
V
 
N
R
 
I
D
 
E
K
 
R
L
 
L
R
 
I
S
 
S
A
 
A
K
 
K
S
 
S
N
 
E
E
 
E
A
 
D
L
 
L

Query Sequence

>GFF854 FitnessBrowser__WCS417:GFF854
MIRLETILTPGRSLVNAPGGSKKKALEQIANLISREVPELEMQDVYEALIAREKLGSTGF
GNGIAIPHCRLKGCETPVSALLHLDAPIDFDAIDGAPVDLLFVLLVPQAATDAHLELLRQ
IASMLDRKDVRDKLRSAKSNEALYQVVLDEQNGQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory