SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_04067 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 14 hits to proteins with known functional sites (download)

8cd1X phikz014 (see paper)
75% identity, 97% coverage: 2:76/77 of query aligns to 1:75/77 of 8cd1X

query
sites
8cd1X
A
x
S
R
|
R
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
 
G
P
|
P
M
 
V
S
x
T
G
 
G
N
|
N
N
 
N
V
x
I
S
|
S
H
 
H
A
|
A
N
x
H
N
|
N
K
|
K
T
 
T
K
x
R
R
 
R
R
|
R
F
|
F
L
|
L
P
|
P
N
|
N
L
 
L
Q
|
Q
S
 
H
R
x
H
R
|
R
I
 
F
W
 
W
V
 
V
E
 
E
S
 
S
E
 
E
N
 
K
R
 
R
W
 
F
V
 
V
R
|
R
L
 
L
R
|
R
I
 
V
S
 
S
N
x
A
A
x
K
G
 
G
L
 
M
R
|
R
L
 
I
I
 
I
D
 
D
K
|
K
N
x
R
G
 
G
I
 
I
D
 
E
A
 
A
V
 
V
L
 
L
A
 
A
D
 
D
L
 
L
R
 
R
A
 
A
R
 
R
G
 
G
E
 
E

8rd8WD Small ribosomal subunit protein uS5 (see paper)
76% identity, 97% coverage: 2:76/77 of query aligns to 1:75/76 of 8rd8WD

query
sites
8rd8WD
A
x
S
R
|
R
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
x
R
P
 
P
M
|
M
S
x
V
G
|
G
N
|
N
N
 
N
V
 
V
S
|
S
H
|
H
A
|
A
N
|
N
N
|
N
K
|
K
T
 
T
K
x
R
R
|
R
R
|
R
F
|
F
L
|
L
P
|
P
N
|
N
L
 
L
Q
x
H
S
 
H
R
x
H
R
|
R
I
 
F
W
 
W
V
 
V
E
 
E
S
 
S
E
 
E
N
 
N
R
 
R
W
 
F
V
 
V
R
|
R
L
 
L
R
|
R
I
 
I
S
 
S
N
x
T
A
x
K
G
 
G
L
 
M
R
|
R
L
 
I
I
 
I
D
 
D
K
|
K
N
x
L
G
 
G
I
 
I
D
 
D
A
 
K
V
 
V
L
 
L
A
 
V
D
 
D
L
 
L
R
 
R
A
 
A
R
 
Q
G
 
G
E
 
Q

8cgvw Tiamulin bound to the 50s subunit (see paper)
72% identity, 97% coverage: 2:76/77 of query aligns to 1:75/77 of 8cgvw

query
sites
8cgvw
A
x
S
R
|
R
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
 
R
P
 
P
M
x
V
S
x
T
G
 
G
N
|
N
N
 
N
V
x
R
S
|
S
H
|
H
A
|
A
N
x
L
N
|
N
K
 
A
T
 
T
K
|
K
R
|
R
R
|
R
F
|
F
L
|
L
P
|
P
N
|
N
L
 
L
Q
x
H
S
 
S
R
x
H
R
|
R
I
 
F
W
 
W
V
 
V
E
 
E
S
 
S
E
 
E
N
 
K
R
 
R
W
 
F
V
 
V
R
 
T
L
 
L
R
|
R
I
 
V
S
 
S
N
x
A
A
x
K
G
 
G
L
x
M
R
|
R
L
 
V
I
 
I
D
|
D
K
|
K
N
x
K
G
 
G
I
 
I
D
 
D
A
 
T
V
 
V
L
 
L
A
 
A
D
 
E
L
 
L
R
 
R
A
 
A
R
 
R
G
 
G
E
 
E

8a3lw 50S ribosomal protein L36 (see paper)
72% identity, 97% coverage: 2:76/77 of query aligns to 1:75/77 of 8a3lw

query
sites
8a3lw
A
x
S
R
|
R
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
 
R
P
 
P
M
 
V
S
x
T
G
 
G
N
|
N
N
 
N
V
x
R
S
|
S
H
|
H
A
|
A
N
x
L
N
|
N
K
 
A
T
 
T
K
|
K
R
|
R
R
|
R
F
|
F
L
|
L
P
|
P
N
|
N
L
 
L
Q
x
H
S
 
S
R
x
H
R
|
R
I
 
F
W
 
W
V
 
V
E
 
E
S
 
S
E
 
E
N
 
K
R
 
R
W
 
F
V
 
V
R
 
T
L
 
L
R
|
R
I
 
V
S
 
S
N
x
A
A
x
K
G
 
G
L
x
M
R
|
R
L
x
V
I
 
I
D
 
D
K
|
K
N
 
K
G
 
G
I
 
I
D
 
D
A
 
T
V
 
V
L
 
L
A
 
A
D
 
E
L
 
L
R
 
R
A
 
A
R
 
R
G
 
G
E
 
E

Sites not aligning to the query:

7uvxW 50S ribosomal protein L28 (see paper)
67% identity, 99% coverage: 1:76/77 of query aligns to 1:76/78 of 7uvxW

query
sites
7uvxW
M
|
M
A
x
S
R
x
K
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
 
R
P
 
P
M
 
V
S
 
V
G
 
G
N
|
N
N
 
N
V
 
V
S
|
S
H
|
H
A
|
A
N
|
N
N
|
N
K
 
K
T
 
T
K
|
K
R
|
R
R
 
R
F
|
F
L
x
E
P
|
P
N
|
N
L
 
L
Q
x
H
S
 
H
R
x
H
R
|
R
I
 
F
W
 
W
V
 
L
E
 
E
S
 
S
E
 
E
N
 
K
R
 
R
W
 
F
V
 
V
R
 
R
L
 
L
R
|
R
I
 
L
S
 
T
N
x
T
A
x
K
G
 
G
L
 
M
R
|
R
L
 
I
I
 
I
D
 
D
K
|
K
N
 
L
G
 
G
I
 
I
D
 
E
A
 
K
V
 
V
L
 
V
A
 
A
D
 
D
L
 
L
R
 
R
A
 
A
R
 
Q
G
 
G
E
 
Q

7uvyW 50S ribosomal protein L2 (see paper)
67% identity, 97% coverage: 2:76/77 of query aligns to 1:75/77 of 7uvyW

query
sites
7uvyW
A
x
S
R
x
K
V
 
V
C
 
C
Q
 
Q
V
 
V
T
 
T
G
 
G
K
|
K
A
 
R
P
 
P
M
x
V
S
x
V
G
 
G
N
|
N
N
|
N
V
|
V
S
|
S
H
|
H
A
|
A
N
|
N
N
|
N
K
|
K
T
 
T
K
|
K
R
|
R
R
|
R
F
|
F
L
x
E
P
|
P
N
|
N
L
 
L
Q
x
H
S
 
H
R
x
H
R
|
R
I
 
F
W
 
W
V
 
L
E
 
E
S
 
S
E
 
E
N
 
K
R
 
R
W
 
F
V
 
V
R
 
R
L
 
L
R
|
R
I
 
L
S
 
T
N
x
T
A
x
K
G
 
G
L
x
M
R
|
R
L
 
I
I
 
I
D
 
D
K
|
K
N
 
L
G
 
G
I
 
I
D
 
E
A
 
K
V
 
V
L
 
V
A
 
A
D
 
D
L
 
L
R
 
R
A
 
A
R
 
Q
G
 
G
E
 
Q

7jilX 50S ribosomal protein L15 (see paper)
50% identity, 96% coverage: 2:75/77 of query aligns to 1:74/76 of 7jilX

query
sites
7jilX
A
x
S
R
|
R
V
 
V
C
 
C
Q
 
D
V
 
L
T
 
T
G
 
G
K
|
K
A
x
R
P
 
A
M
|
M
S
x
V
G
 
G
N
|
N
N
 
N
V
|
V
S
|
S
H
 
H
A
|
A
N
x
M
N
|
N
K
|
K
T
 
T
K
|
K
R
|
R
R
x
K
F
|
F
L
x
S
P
x
V
N
|
N
L
 
L
Q
 
V
S
x
K
R
x
K
R
|
R
I
 
F
W
 
Y
V
 
L
E
 
P
S
 
E
E
 
E
N
 
D
R
 
R
W
 
W
V
 
I
R
 
T
L
 
L
R
|
R
I
 
V
S
 
Q
N
x
R
A
 
S
G
 
T
L
 
I
R
x
K
L
 
T
I
 
I
D
 
N
K
|
K
N
 
N
G
 
G
I
 
I
D
 
T
A
 
A
V
 
V
L
 
L
A
 
K
D
 
K
L
 
A
R
 
Q
A
 
S
R
 
A
G
 
G

5mmiY Structure of the large subunit of the chloroplast ribosome (see paper)
51% identity, 84% coverage: 3:67/77 of query aligns to 2:66/77 of 5mmiY

query
sites
5mmiY
R
|
R
V
 
I
C
 
C
Q
 
P
V
 
F
T
 
T
G
 
G
K
|
K
A
 
K
P
 
S
M
x
N
S
x
K
G
x
A
N
|
N
N
x
R
V
 
V
S
|
S
H
 
H
A
x
S
N
|
N
N
x
H
K
 
K
T
 
T
K
|
K
R
|
R
R
 
L
F
x
Q
L
x
F
P
x
V
N
|
N
L
 
L
Q
 
Q
S
x
Y
R
x
K
R
|
R
I
 
V
W
 
W
V
 
W
E
 
E
S
 
A
E
 
G
N
 
K
R
 
R
W
 
F
V
 
V
R
x
K
L
 
L
R
|
R
I
 
L
S
 
S
N
x
T
A
x
K
G
 
A
L
 
L
R
x
K
L
 
T
I
 
I
D
 
E
K
|
K
N
|
N
G
 
G
I
 
L
D
 
D
A
 
A
V
 
V

Sites not aligning to the query:

4v61BY Ribosomal Protein S8 (see paper)
49% identity, 84% coverage: 3:67/77 of query aligns to 1:65/76 of 4v61BY

query
sites
4v61BY
R
|
R
V
 
I
C
 
C
Q
 
P
V
x
F
T
|
T
G
 
G
K
 
K
A
 
K
P
 
S
M
 
N
S
 
R
G
x
A
N
|
N
N
x
K
V
|
V
S
 
S
H
|
H
A
x
S
N
|
N
N
x
H
K
 
K
T
 
T
K
|
K
R
 
K
R
x
L
F
 
Q
L
 
F
P
x
V
N
|
N
L
|
L
Q
|
Q
S
 
Y
R
 
K
R
|
R
I
 
I
W
|
W
V
 
W
E
|
E
S
 
A
E
 
G
N
 
K
R
|
R
W
x
Y
V
 
V
R
 
K
L
 
L
R
 
R
I
 
L
S
 
S
N
 
T
A
x
K
G
 
A
L
 
I
R
 
K
L
 
T
I
 
I
D
 
E
K
 
K
N
 
N
G
 
G
I
 
L
D
 
D
A
 
A
V
 
V

Sites not aligning to the query:

8fmwAZ 30S ribosomal protein S10 (see paper)
38% identity, 87% coverage: 2:68/77 of query aligns to 1:80/91 of 8fmwAZ

query
sites
8fmwAZ
A
|
A
R
|
R
V
 
K
C
 
C
Q
 
E
V
 
I
T
 
T
G
 
G
K
|
K
A
 
K
P
x
T
M
|
M
S
x
F
G
 
G
N
|
N
N
 
N
V
 
V
-
 
P
-
x
R
-
x
K
-
 
G
-
 
L
-
 
A
-
x
K
-
 
K
-
x
K
-
 
G
-
 
G
-
x
A
-
 
G
S
x
Q
H
|
H
A
x
I
N
x
G
N
 
V
K
|
K
T
|
T
K
|
K
R
|
R
R
 
T
F
|
F
L
x
K
P
x
V
N
|
N
L
 
L
Q
x
I
S
 
N
R
 
K
R
x
K
I
 
F
W
 
F
V
 
I
E
 
P
S
 
N
E
 
L
N
 
G
R
|
R
W
x
S
V
 
V
R
 
S
L
 
I
R
 
K
I
 
V
S
 
S
N
x
A
A
 
N
G
 
A
L
 
L
R
|
R
L
 
S
I
 
I
D
 
S
K
|
K
N
 
I
G
 
G
I
 
L
D
 
D
A
 
A
V
 
F
L
 
L

Sites not aligning to the query:

7p7qZ 30S ribosomal protein S19 (see paper)
45% identity, 70% coverage: 2:55/77 of query aligns to 1:56/61 of 7p7qZ

query
sites
7p7qZ
A
|
A
R
x
K
V
 
V
C
 
C
Q
 
Y
V
 
F
T
 
T
G
 
G
K
x
R
A
 
K
P
x
T
M
x
S
S
|
S
G
 
G
N
|
N
N
 
N
V
x
R
S
|
S
H
|
H
A
|
A
N
 
M
N
|
N
K
 
S
T
 
T
K
|
K
R
|
R
R
 
T
F
x
V
L
x
K
P
|
P
N
|
N
L
 
L
Q
|
Q
S
 
K
R
 
V
R
|
R
I
 
V
W
 
L
V
 
I
E
 
D
S
 
G
E
x
K
N
 
P
R
 
K
-
x
K
-
 
V
W
 
W
V
 
V
R
 
S
L
x
T
R
|
R
I
 
A
S
 
L
N
x
K
A
x
S
G
 
G

Sites not aligning to the query:

6yweS structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state (see paper)
44% identity, 77% coverage: 15:73/77 of query aligns to 63:123/179 of 6yweS

query
sites
6yweS
G
 
G
N
|
N
N
 
N
V
 
V
S
|
S
H
 
K
A
x
R
N
|
N
N
x
E
-
x
I
K
|
K
T
 
T
K
x
R
R
|
R
R
 
K
F
x
W
L
x
R
P
|
P
N
|
N
L
 
V
Q
|
Q
S
x
Q
R
x
K
R
|
R
I
 
L
W
 
W
V
 
S
E
 
K
S
 
S
E
 
L
N
 
G
R
 
V
W
 
F
V
 
V
R
 
R
L
 
T
R
 
R
I
 
V
S
 
T
N
x
T
A
x
R
G
 
V
L
 
L
R
|
R
L
x
T
I
 
I
D
 
D
K
|
K
-
 
V
N
 
G
G
 
G
I
 
L
D
 
D
A
 
E
V
 
Y
L
 
L
A
 
L
D
 
G
L
x
H
R
x
K
A
|
A

Sites not aligning to the query:

5mrcS of the yeast mitochondrial ribosome - Class A (see paper)
33% identity, 77% coverage: 15:73/77 of query aligns to 61:120/185 of 5mrcS

query
sites
5mrcS
G
 
G
N
|
N
N
|
N
V
x
I
S
|
S
H
 
E
A
x
S
N
x
K
N
 
A
K
|
K
T
 
T
K
x
R
R
x
K
R
 
K
F
x
W
L
|
L
P
|
P
N
|
N
L
 
V
Q
 
V
S
 
K
R
x
K
R
 
G
I
 
L
W
 
W
V
 
S
E
 
E
S
 
T
E
 
L
N
 
N
R
 
R
W
 
K
V
x
I
R
x
S
L
x
I
R
 
K
I
 
M
S
 
T
N
x
A
A
x
K
G
 
V
L
|
L
R
x
K
L
x
T
I
 
I
D
 
S
K
|
K
N
 
E
-
 
G
G
 
G
I
 
I
D
 
D
A
 
N
V
 
Y
L
 
L
A
 
T
D
x
K
L
 
E
R
x
K
A
x
S

Sites not aligning to the query:

7f0dX Cryo-em structure of mycobacterium tuberculosis 50s ribosome subunit bound with clarithromycin (see paper)
49% identity, 45% coverage: 1:35/77 of query aligns to 1:35/63 of 7f0dX

query
sites
7f0dX
M
|
M
A
|
A
R
 
A
V
 
V
C
 
C
Q
 
D
V
 
I
T
 
C
G
 
G
K
|
K
A
 
G
P
|
P
M
 
G
S
x
F
G
 
G
N
x
K
N
 
S
V
|
V
S
|
S
H
|
H
A
x
S
N
x
H
N
x
R
K
x
R
T
|
T
K
 
S
R
|
R
R
 
R
F
x
W
L
x
D
P
|
P
N
|
N
L
 
I
Q
|
Q
S
x
T

Sites not aligning to the query:

Query Sequence

>H281DRAFT_04067
MARVCQVTGKAPMSGNNVSHANNKTKRRFLPNLQSRRIWVESENRWVRLRISNAGLRLID
KNGIDAVLADLRARGEA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory