Comparing HSERO_RS04820 FitnessBrowser__HerbieS:HSERO_RS04820 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
Q9FMF7 Dicarboxylate transporter 2.1, chloroplastic; AtpDCT1; Glutamate/malate translocator from Arabidopsis thaliana (Mouse-ear cress) (see paper)
37% identity, 96% coverage: 19:501/501 of query aligns to 95:563/563 of Q9FMF7
6okzB Structure of vcindy bound to fumarate
24% identity, 80% coverage: 95:496/501 of query aligns to 70:444/444 of 6okzB
7t9gA Structure of vcindy-na+ (see paper)
24% identity, 80% coverage: 95:496/501 of query aligns to 71:445/445 of 7t9gA
6wtxA Structure of vcindy in complex with terephthalate (see paper)
24% identity, 80% coverage: 95:496/501 of query aligns to 71:445/445 of 6wtxA
>HSERO_RS04820 FitnessBrowser__HerbieS:HSERO_RS04820
MLAQLKAAFKYFNDAVPFKLVPALIATAVLIALLLTPCPTGLEPKAWALVAIFLTTIVAI
ILKVMPIGVMAMMAIVIVSLSQVTSTSSKGAITDALASFSNPLIWLIVVAILISRGLKKT
GLGRRVGLMFIALLGKRTIGIGYGLAICELVLAPFTPSNTARGGGIVHPIMKSIANAFDS
DPAKGTQNKVGSYLALVNYHANPITSAMFLTATAPNPLVVNYVAKATGHALQLTWTTWAL
CMLLPGLVCLLIMPMVIYLLSPPELKSTPNAVDYARSELDKMGKLGASEKVMLGTFALLL
LLWANVPAMLLGAAFTLDPTVVAFVGLFVLIITGTIDWDDVLSEKSAWDTLVWFGALVML
AEQLNKTGVVAWFSEGMKAAIVASGMGWIAVAAVLLLVFVLSHYFFASTTAHISAMMLAF
LTVGAQLLPPQYVVPFMLMMTAGSGVMMTLTHYATGTSPIIFGSGYVSMGKWWGVGFVMA
VVELLVFATVGMVWWKGLGYW
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory