Comparing HSERO_RS05190 FitnessBrowser__HerbieS:HSERO_RS05190 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
82% identity, 91% coverage: 33:357/357 of query aligns to 5:329/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
82% identity, 91% coverage: 33:357/357 of query aligns to 5:329/329 of 3urmA
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
65% identity, 92% coverage: 29:357/357 of query aligns to 1:329/329 of 4wwhA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
52% identity, 92% coverage: 31:357/357 of query aligns to 1:324/324 of 4ys6A
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
36% identity, 91% coverage: 29:352/357 of query aligns to 1:332/340 of 4rxuA
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
37% identity, 91% coverage: 33:356/357 of query aligns to 5:307/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
36% identity, 90% coverage: 33:353/357 of query aligns to 6:305/310 of 4ywhA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 87% coverage: 29:340/357 of query aligns to 11:370/374 of 6s3tA
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 87% coverage: 29:340/357 of query aligns to 9:368/373 of 6ruxA
4z0nA Crystal structure of a periplasmic solute binding protein (ipr025997) from streptobacillus moniliformis dsm-12112 (smon_0317, target efi- 511281) with bound d-galactose
26% identity, 82% coverage: 50:343/357 of query aligns to 21:304/307 of 4z0nA
Sites not aligning to the query:
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 4 papers)
26% identity, 77% coverage: 68:343/357 of query aligns to 64:328/332 of P0AEE5
Sites not aligning to the query:
2gbpA Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
26% identity, 77% coverage: 68:343/357 of query aligns to 41:305/309 of 2gbpA
Sites not aligning to the query:
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
21% identity, 63% coverage: 68:292/357 of query aligns to 44:246/287 of 4yo7A
Sites not aligning to the query:
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
26% identity, 77% coverage: 68:343/357 of query aligns to 64:328/332 of P23905
Sites not aligning to the query:
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose (see paper)
26% identity, 77% coverage: 68:343/357 of query aligns to 40:304/305 of 2qw1A
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside (see paper)
26% identity, 77% coverage: 68:343/357 of query aligns to 39:303/305 of 3ga5A
Sites not aligning to the query:
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium (see paper)
26% identity, 77% coverage: 68:343/357 of query aligns to 41:305/309 of 1gcaA
Sites not aligning to the query:
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
25% identity, 62% coverage: 33:254/357 of query aligns to 4:206/301 of 2x7xA
Sites not aligning to the query:
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
24% identity, 62% coverage: 32:254/357 of query aligns to 4:208/287 of 5ibqA
Sites not aligning to the query:
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
24% identity, 62% coverage: 32:254/357 of query aligns to 4:208/287 of 4ry0A
Sites not aligning to the query:
>HSERO_RS05190 FitnessBrowser__HerbieS:HSERO_RS05190
MKIKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKG
YQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRL
IRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGA
MSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYD
GLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVG
MVDAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory