SitesBLAST
Comparing HSERO_RS19735 FitnessBrowser__HerbieS:HSERO_RS19735 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6a50A Structure of benzoylformate decarboxylases in complex with cofactor tpp
27% identity, 97% coverage: 17:517/518 of query aligns to 15:522/527 of 6a50A
- binding magnesium ion: N117 (≠ S120), L118 (= L121), R120 (≠ H123), D428 (= D417), N455 (= N444), T457 (≠ Q446)
- binding thiamine diphosphate: N23 (= N25), P24 (= P26), E47 (= E51), H70 (= H74), T377 (≠ G366), S378 (≠ T367), G401 (= G390), L403 (≠ I392), G427 (≠ S416), D428 (= D417), G429 (= G418), S430 (= S419), Y433 (= Y422), N455 (= N444), T457 (≠ Q446), Y458 (= Y447), G459 (≠ A448), M460 (≠ I449), L461 (= L450)
3fznA Intermediate analogue in benzoylformate decarboxylase (see paper)
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/523 of 3fznA
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), E27 (= E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), Y159 (≠ A163), P253 (= P258), H280 (≠ F286), S375 (≠ G365), G400 (= G390), L402 (≠ I392), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-{(S)-hydroxy[(R)-hydroxy(methoxy)phosphoryl]phenylmethyl}-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: N22 (= N25), P23 (= P26), G24 (= G27), S25 (≠ T28), E46 (= E51), H69 (= H74), H280 (≠ F286), T376 (≠ G366), S377 (≠ T367), G400 (= G390), L402 (≠ I392), G426 (≠ S416), D427 (= D417), G428 (= G418), S429 (= S419), Y432 (= Y422), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449)
- binding magnesium ion: D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding phosphate ion: Q286 (≠ A294), L288 (≠ V296), K289 (≠ A297), P290 (= P298)
1bfdA Benzoylformate decarboxylase from pseudomonas putida (see paper)
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/523 of 1bfdA
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), E27 (= E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), Y159 (≠ A163), P253 (= P258), H280 (≠ F286), S375 (≠ G365), G400 (= G390), L402 (≠ I392), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding calcium ion: D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding magnesium ion: N116 (≠ S120), L117 (= L121), R119 (≠ H123)
- binding thiamine diphosphate: T376 (≠ G366), S377 (≠ T367), L402 (≠ I392), G426 (≠ S416), D427 (= D417), G428 (= G418), S429 (= S419), Y432 (= Y422), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450)
5deiA Benzoylformate decarboxylase from pseudomonas putida
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/524 of 5deiA
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), E27 (= E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), Y159 (≠ A163), P253 (= P258), H280 (≠ F286), S375 (≠ G365), G400 (= G390), L402 (≠ I392), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding bicarbonate ion: S25 (≠ T28), H69 (= H74), L109 (= L114)
- binding calcium ion: N185 (≠ D187), D186 (= D188), D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding magnesium ion: N116 (≠ S120), L117 (= L121), R119 (≠ H123)
- binding thiamine diphosphate: N22 (= N25), P23 (= P26), E46 (= E51), H69 (= H74), T376 (≠ G366), S377 (≠ T367), L402 (≠ I392), G426 (≠ S416), D427 (= D417), G428 (= G418), S429 (= S419), Y432 (= Y422), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450)
Sites not aligning to the query:
3fsjX Crystal structure of benzoylformate decarboxylase in complex with the inhibitor mbp (see paper)
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/524 of 3fsjX
- active site: G24 (= G27), S25 (≠ T28), E27 (= E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), H280 (≠ F286), G400 (= G390), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450)
- binding calcium ion: D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-{(S)-hydroxy[(R)-hydroxy(methoxy)phosphoryl]phenylmethyl}-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: H280 (≠ F286), T376 (≠ G366), S377 (≠ T367), F396 (≠ T386), G400 (= G390), L402 (≠ I392), G426 (≠ S416), D427 (= D417), G428 (= G418), S429 (= S419), Y432 (= Y422), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
Sites not aligning to the query:
1mczA Benzoylformate decarboxylase from pseudomonas putida complexed with an inhibitor, r-mandelate (see paper)
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/524 of 1mczA
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), E27 (= E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), Y159 (≠ A163), P253 (= P258), H280 (≠ F286), S375 (≠ G365), G400 (= G390), L402 (≠ I392), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding magnesium ion: N116 (≠ S120), L117 (= L121), R119 (≠ H123), D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding (r)-mandelic acid: S25 (≠ T28), H69 (= H74), L109 (= L114), H280 (≠ F286), T376 (≠ G366), F463 (vs. gap)
- binding thiamine diphosphate: N22 (= N25), P23 (= P26), E46 (= E51), H69 (= H74), T376 (≠ G366), S377 (≠ T367), G400 (= G390), L402 (≠ I392), G426 (≠ S416), D427 (= D417), G428 (= G418), S429 (= S419), Y432 (= Y422), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450)
Sites not aligning to the query:
3f6bX Crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor paa (see paper)
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/525 of 3f6bX
- active site: G24 (= G27), E46 (= E51), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), G400 (= G390), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450)
- binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium: N22 (= N25), P23 (= P26), G24 (= G27), S25 (≠ T28), E46 (= E51), H69 (= H74)
Sites not aligning to the query:
1pi3A E28q mutant benzoylformate decarboxylase from pseudomonas putida
27% identity, 97% coverage: 17:517/518 of query aligns to 14:521/523 of 1pi3A
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), Q27 (≠ E30), E46 (= E51), H69 (= H74), L108 (≠ P113), L109 (= L114), T110 (≠ S115), N111 (≠ S116), Y159 (≠ A163), P253 (= P258), H280 (≠ F286), S375 (≠ G365), G400 (= G390), L402 (≠ I392), D427 (= D417), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding calcium ion: D427 (= D417), N454 (= N444), T456 (≠ Q446)
- binding magnesium ion: N116 (≠ S120), L117 (= L121), R119 (≠ H123)
- binding 2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-4-methyl-2-oxo-2,3-dihydro-1,3-thiazol-5-yl}ethyl trihydrogendiphosphate: T376 (≠ G366), S377 (≠ T367), L402 (≠ I392), G426 (≠ S416), G428 (= G418), S429 (= S419), Y432 (= Y422), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450)
6qsiA Pseudomonas fluorescens pf-5 thiamine diphosphate-dependent 4- hydroxybenzoylformate decarboxylase (see paper)
28% identity, 97% coverage: 14:516/518 of query aligns to 11:520/525 of 6qsiA
- active site: N22 (= N25), G24 (= G27), S25 (≠ T28), N26 (≠ T29), E27 (= E30), E46 (= E51), H69 (= H74), M108 (≠ P113), L109 (= L114), A110 (≠ S115), Y159 (= Y167), P253 (= P258), H280 (≠ G287), S375 (≠ G365), G400 (= G390), L402 (≠ I392), Y457 (= Y447), A459 (≠ I449), L460 (= L450), F463 (vs. gap)
- binding thiamine diphosphate: N22 (= N25), P23 (= P26), E46 (= E51), H69 (= H74), T376 (≠ G366), S377 (≠ T367), L402 (≠ I392), G426 (≠ S416), G428 (= G418), S429 (= S419), Y432 (= Y422), N454 (= N444), T456 (≠ Q446), Y457 (= Y447), G458 (≠ A448), A459 (≠ I449), L460 (= L450)
7orxCCC jostii RHA1 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase
28% identity, 97% coverage: 17:516/518 of query aligns to 18:524/531 of 7orxCCC
- active site: N26 (= N25), G28 (= G27), S29 (≠ T28), N30 (≠ T29), E31 (= E30), E50 (= E51), H73 (= H74), M112 (≠ P113), L113 (= L114), S114 (= S115), N115 (≠ S116), Y163 (≠ A163), P257 (= P258), H284 (≠ F286), S379 (≠ G365), G404 (= G390), L406 (≠ I392), D431 (= D417), N458 (= N444), T460 (≠ Q446), Y461 (= Y447), A463 (≠ I449), L464 (= L450), F467 (≠ A459)
- binding thiamine diphosphate: N26 (= N25), S29 (≠ T28), E50 (= E51), H73 (= H74), T380 (≠ G366), S381 (≠ T367), G404 (= G390), L406 (≠ I392), G430 (≠ S416), G432 (= G418), S433 (= S419), Y436 (= Y422), N458 (= N444), T460 (≠ Q446), Y461 (= Y447), G462 (≠ A448)
4q9dB X-ray structure of a putative thiamin diphosphate-dependent enzyme isolated from mycobacterium smegmatis (see paper)
26% identity, 96% coverage: 18:514/518 of query aligns to 17:513/519 of 4q9dB
- active site: N24 (= N25), G26 (= G27), S27 (≠ T28), T28 (= T29), E29 (= E30), Q47 (= Q50), E48 (= E51), H71 (= H74), V107 (≠ Y110), D108 (= D111), Y110 (≠ P113), L111 (= L114), N112 (≠ S115), N113 (≠ S116), L161 (≠ A163), P252 (= P258), Y279 (≠ V289), M374 (≠ V363), S376 (≠ G365), G401 (= G390), I403 (= I392), D432 (= D417), N459 (= N444), E461 (≠ Q446), Y462 (= Y447), I464 (= I449)
- binding magnesium ion: D432 (= D417), N459 (= N444), E461 (≠ Q446)
Sites not aligning to the query:
4k9qA The crystal structure of benzoylformate decarboxylase from polynucleobacter necessarius
24% identity, 96% coverage: 19:514/518 of query aligns to 17:520/531 of 4k9qA
- active site: N23 (= N25), G25 (= G27), S26 (≠ T28), T27 (= T29), E28 (= E30), E47 (= E51), H70 (= H74), N106 (≠ D111), E107 (≠ A112), L110 (≠ S115), T111 (≠ S116), L160 (≠ A163), T251 (≠ P258), Y278 (≠ F286), V370 (= V363), C373 (≠ G366), G398 (= G390), L400 (≠ I392), D429 (= D417), N456 (= N444), E458 (≠ Q446), Y459 (= Y447), G460 (≠ A448), I461 (= I449), L462 (= L450), F465 (≠ E453)
- binding magnesium ion: D429 (= D417), N456 (= N444), E458 (≠ Q446)
- binding thiamine diphosphate: P374 (≠ T367), S375 (≠ C368), L400 (≠ I392), G428 (≠ S416), D429 (= D417), G430 (= G418), S431 (= S419), Y434 (= Y422), N456 (= N444), E458 (≠ Q446), Y459 (= Y447), G460 (≠ A448), I461 (= I449), L462 (= L450)
Sites not aligning to the query:
6vz8D Arabidopsis thaliana acetohydroxyacid synthase complex with valine bound (see paper)
25% identity, 99% coverage: 6:516/518 of query aligns to 13:527/531 of 6vz8D
- active site: Y32 (≠ N25), G34 (= G27), G35 (≠ T28), A36 (≠ T29), S37 (≠ E30), E58 (= E51), T81 (≠ H74), F120 (≠ P113), Q121 (≠ L114), E122 (≠ S115), K170 (≠ A163), M256 (≠ F254), V283 (≠ I283), V376 (≠ G365), G402 (= G390), M404 (≠ I392), D429 (= D417), N456 (= N444), H458 (= H445), L459 (≠ Q446), M461 (≠ A448), V462 (≠ I449), W465 (≠ N452)
- binding flavin-adenine dinucleotide: G214 (= G209), G215 (= G210), G216 (= G211), T236 (≠ H231), L237 (≠ I232), L254 (≠ P252), H257 (≠ D255), R278 (≠ L280), R282 (≠ P282), V283 (≠ I283), I291 (≠ H291), G399 (≠ T388)
- binding magnesium ion: H458 (= H445), L459 (≠ Q446), G460 (≠ Y447)
- binding thiamine diphosphate: E58 (= E51), P84 (= P77), V376 (≠ G365), G377 (= G366), Q378 (≠ T367), H379 (≠ C368), G402 (= G390), M404 (≠ I392), G428 (≠ S416), D429 (= D417), G430 (= G418), S431 (= S419), L459 (≠ Q446), G460 (≠ Y447), M461 (≠ A448), V462 (≠ I449)
6lpiB Crystal structure of ahas holo-enzyme (see paper)
24% identity, 100% coverage: 3:518/518 of query aligns to 5:519/539 of 6lpiB
- active site: I27 (≠ N25), G29 (= G27), G30 (≠ T28), S31 (≠ T29), I32 (≠ E30), E53 (= E51), C76 (≠ H74), F115 (≠ P113), Q116 (≠ L114), E117 (≠ S115), K165 (≠ A163), M256 (≠ G248), A283 (≠ Y288), V375 (≠ G365), G401 (= G390), M403 (≠ I392), D428 (= D417), N455 (≠ H445), A457 (≠ Y447), L458 (≠ A448), L460 (= L450), V461 (≠ R451), Q464 (≠ L454)
- binding flavin-adenine dinucleotide: R155 (≠ G154), G212 (= G209), G213 (= G210), G214 (= G211), T236 (≠ I228), L237 (≠ A229), M238 (≠ A230), L254 (≠ E246), M256 (≠ G248), H257 (≠ Q249), G276 (= G278), A277 (= A279), R278 (≠ Y285), D280 (≠ G287), R282 (vs. gap), A283 (≠ Y288), D300 (≠ S305), I301 (≠ L306), D319 (≠ P325), V320 (≠ A326), M380 (≠ Y370), G398 (≠ T388)
- binding magnesium ion: D428 (= D417), N455 (≠ H445)
- binding thiamine diphosphate: E53 (= E51), C76 (≠ H74), P79 (= P77), G376 (= G366), Q377 (≠ T367), H378 (≠ C368), G401 (= G390), M403 (≠ I392), G427 (≠ S416), D428 (= D417), G429 (= G418), S430 (= S419), M433 (≠ Y422), N455 (≠ H445), A457 (≠ Y447), L458 (≠ A448), G459 (≠ I449), L460 (= L450), V461 (≠ R451)
4rjiC Acetolactate synthase from bacillus subtilis bound to thdp - crystal form i (see paper)
23% identity, 99% coverage: 3:516/518 of query aligns to 1:530/555 of 4rjiC
- binding magnesium ion: D438 (= D417), D465 (≠ N444), T467 (≠ Q446)
- binding thiamine diphosphate: P24 (= P26), E48 (= E51), P74 (= P77), S387 (≠ T367), H388 (≠ C368), Q411 (≠ G390), G437 (≠ S416), D438 (= D417), G439 (= G418), G440 (≠ S419), T467 (≠ Q446), Y468 (= Y447), D469 (≠ A448), M470 (≠ I449), V471 (≠ L450)
Sites not aligning to the query:
4rjkG Acetolactate synthase from bacillus subtilis bound to lthdp - crystal form ii (see paper)
23% identity, 99% coverage: 6:516/518 of query aligns to 3:529/553 of 4rjkG
- binding magnesium ion: D437 (= D417), D464 (≠ N444), T466 (≠ Q446)
- binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(1-carboxy-1-hydroxyethyl)-5-(2-{[hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: E47 (= E51), Q110 (≠ L114)
- binding thiamine diphosphate: I384 (≠ G365), G385 (= G366), S386 (≠ T367), H387 (≠ C368), Q410 (≠ G390), L412 (≠ I392), G436 (≠ S416), D437 (= D417), G438 (= G418), G439 (≠ S419), T466 (≠ Q446), Y467 (= Y447), D468 (≠ A448), M469 (≠ I449), V470 (≠ L450)
Sites not aligning to the query:
4rjkF Acetolactate synthase from bacillus subtilis bound to lthdp - crystal form ii (see paper)
23% identity, 99% coverage: 6:516/518 of query aligns to 3:529/552 of 4rjkF
- binding magnesium ion: D437 (= D417), D464 (≠ N444), T466 (≠ Q446)
- binding pyruvic acid: A25 (≠ T28), K26 (≠ E30)
- binding thiamine diphosphate: P23 (= P26), E47 (= E51), P73 (= P77), G385 (= G366), S386 (≠ T367), H387 (≠ C368), Q410 (≠ G390), L412 (≠ I392), G436 (≠ S416), D437 (= D417), G438 (= G418), G439 (≠ S419), T466 (≠ Q446), Y467 (= Y447), D468 (≠ A448), M469 (≠ I449), V470 (≠ L450)
Sites not aligning to the query:
5dx6B Acetolactate synthase from klebsiella pneumoniae soaked with beta- fluoropyruvate
23% identity, 98% coverage: 6:514/518 of query aligns to 19:535/557 of 5dx6B
- active site: I38 (≠ N25), G40 (= G27), A41 (≠ T28), K42 (≠ E30), I43 (≠ L31), E63 (= E51), T86 (≠ H74), H125 (≠ P113), Q126 (≠ L114), S127 (= S115), Q175 (≠ A163), L268 (vs. gap), E295 (vs. gap), M392 (≠ G365), Q418 (≠ G390), M420 (≠ I392), D445 (= D417), D472 (≠ N444), G474 (≠ Q446), Y475 (= Y447), M477 (≠ I449), V478 (≠ L450), Q481 (≠ E453)
- binding 3-fluoro-2-oxopropanoic acid: G264 (vs. gap), R265 (vs. gap), Q272 (≠ E262), A400 (vs. gap), R401 (vs. gap), Y404 (≠ V375)
- binding magnesium ion: S135 (≠ H123), T138 (≠ S126), D445 (= D417), D472 (≠ N444), G474 (≠ Q446)
- binding thiamine diphosphate: G393 (= G366), S394 (≠ T367), F395 (≠ C368), Q418 (≠ G390), M420 (≠ I392), G444 (≠ S416), D445 (= D417), G446 (= G418), D472 (≠ N444), G474 (≠ Q446), Y475 (= Y447), N476 (≠ A448), M477 (≠ I449), V478 (≠ L450)
Sites not aligning to the query:
4qq8C Crystal structure of the formolase fls in space group p 43 21 2 (see paper)
25% identity, 88% coverage: 61:518/518 of query aligns to 59:543/569 of 4qq8C
- active site: T72 (≠ H74), L111 (= L114), Q112 (≠ S115), A113 (≠ S116), G114 (≠ D117), W162 (≠ A163), L255 (vs. gap), T283 (≠ V289), G392 (= G365), N418 (≠ G390), M420 (≠ I392), D447 (= D417), N474 (= N444), S476 (≠ Q446), W477 (≠ Y447), W479 (≠ I449), T480 (≠ E453), F483 (≠ R456)
- binding magnesium ion: D447 (= D417), N474 (= N444), S476 (≠ Q446)
- binding thiamine diphosphate: Q112 (≠ S115), G392 (= G365), G393 (= G366), L394 (≠ T367), T395 (≠ C368), N418 (≠ G390), M420 (≠ I392), G446 (≠ S416), D447 (= D417), G448 (= G418), S449 (= S419), Y452 (= Y422), N474 (= N444), S476 (≠ Q446), W477 (≠ Y447), G478 (≠ A448), W479 (≠ I449), T480 (≠ E453)
Sites not aligning to the query:
P23234 Indole-3-pyruvate decarboxylase; Indolepyruvate decarboxylase; EC 4.1.1.74 from Enterobacter cloacae (see paper)
23% identity, 100% coverage: 2:518/518 of query aligns to 3:530/552 of P23234
- E52 (= E51) binding
- D435 (= D417) binding
- N462 (= N444) binding
Query Sequence
>HSERO_RS19735 FitnessBrowser__HerbieS:HSERO_RS19735
MTRYTGAHALWAGLLDQGVDTCFANPGTTELDLVRGLESFPKLRCVVALQENVCTGAADG
YGRMLGRPASTLLHLGPGFANGIANLHNARRARTPIVNIIGDHTSWHLPYDAPLSSDIES
LAHPVSGWVHRITGTADIAAAAAESVRQSTAAGGQGSTLIFPADFQYADMAEASPAAATE
KDTGQADDYRADQALARLQGAQRVVFLLGGGGEESGLGARAQRAVARIAAHIGCSVYAET
FPARAERGQGLPSFDRLPYFPEPARKVLDDADLVVLVGALPPITYFGYVGHPSALVAPER
LLTISLPGRPAAGRVEQLADALGAPAYVTPQHALPPLPEGELTPQKIAAVLARELPERAI
VSVEGGTCGYPFYAVSDAARPHTVLTNTGGAIGQGLPVALGAAVACPDRTVVGLLSDGST
QYTIQTLWSLAHENARVVVLIAANHQYAILRNELRRDGAPLGERAAQMTALDHPRIDWVG
LAQSYGVPASRAETAQQLQQQLQAAFAGTGPALIEMAL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory