Comparing HSERO_RS22200 FitnessBrowser__HerbieS:HSERO_RS22200 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
5htxA Putative sugar kinases from arabidopsis thaliana in complex with adp (see paper)
24% identity, 51% coverage: 4:235/459 of query aligns to 7:232/424 of 5htxA
Sites not aligning to the query:
5htvA Putative sugar kinases from arabidopsis thaliana in complex with amppnp (see paper)
24% identity, 51% coverage: 4:235/459 of query aligns to 7:232/424 of 5htvA
Sites not aligning to the query:
Q8L794 D-ribulose kinase; D-ribulokinase; Inactive Xylulose kinase 1; Atxk-1; EC 2.7.1.47 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
24% identity, 51% coverage: 4:235/459 of query aligns to 59:284/478 of Q8L794
Sites not aligning to the query:
>HSERO_RS22200 FitnessBrowser__HerbieS:HSERO_RS22200
IAVFDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHHDVAAIEAWLLENLAALARQ
WRIRAIVPVTHGATAALVDEAGLVLPVADYEHDFALPPAHRPYESLRPPFAQSASPLLGM
GLNLGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAAGELSSLGCHTDLWQPGQQC
YSSLLAQCNWTPLMPPLRAAWERLGPLRPELAQRTGLPADCAVLCGVHDSNASLLRYLRG
TGGGPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLGAPVACMRFMGGREFAQIAG
DDLPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQAPQQPGSRYALATLYCALM
TAYCLDALDAPGEIVVEGSFTANPHFAALLAALVSRTVYRSSDASGTTLGGWLLDRWERA
PETATLPALLPAEPLALRGLAAYREDWLRKLGELERVAA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory