SitesBLAST – Find functional sites

 

SitesBLAST

Comparing MMJJ_RS07505 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC2; RNA polymerases I, II, and III subunit ABC2; DNA-directed RNA polymerase II subunit F; RPB6 homolog from Rattus norvegicus (Rat) (see paper)
40% identity, 89% coverage: 3:53/57 of query aligns to 57:108/127 of O88828

query
sites
O88828
L
 
M
T
 
T
K
 
K
F
 
Y
E
 
E
T
 
R
A
 
A
R
 
R
L
 
V
I
 
L
G
 
G
A
 
T
R
 
R
S
 
A
L
 
L
Q
 
Q
I
 
I
S
 
A
D
 
M
G
 
C
A
 
A
P
 
P
L
 
V
A
 
M
I
 
V
E
 
E
S
 
L
E
 
E
-
 
G
K
 
E
T
 
T
S
 
D
S
 
P
L
 
L
D
 
L
L
 
I
A
 
A
D
 
M
D
 
K
E
 
E
V
 
L
K
 
K
Q
 
A
G
 
R
K
 
K
L
 
I
P
 
P
L
 
I
C
 
I
V
 
I
K
 
R
K
 
R

Sites not aligning to the query:

Query Sequence

>MMJJ_RS07505
MKLTKFETARLIGARSLQISDGAPLAIESEKTSSLDLADDEVKQGKLPLCVKKQAKN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory