Comparing PP_1071 FitnessBrowser__Putida:PP_1071 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
59% identity, 92% coverage: 19:300/306 of query aligns to 1:276/278 of 2ia4B
2vhaA Debp (see paper)
60% identity, 89% coverage: 30:300/306 of query aligns to 7:275/276 of 2vhaA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
59% identity, 80% coverage: 30:274/306 of query aligns to 5:247/503 of 8ovoA
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
34% identity, 76% coverage: 38:270/306 of query aligns to 4:225/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
34% identity, 76% coverage: 38:270/306 of query aligns to 4:223/225 of 4zv2A
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
32% identity, 78% coverage: 31:270/306 of query aligns to 6:234/243 of 5eyfB
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
33% identity, 79% coverage: 30:270/306 of query aligns to 2:228/229 of 5t0wA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
28% identity, 79% coverage: 31:272/306 of query aligns to 3:229/229 of 6svfA
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
28% identity, 78% coverage: 30:268/306 of query aligns to 3:229/247 of 2yjpA
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
28% identity, 79% coverage: 29:269/306 of query aligns to 1:229/231 of 2v25A
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
27% identity, 77% coverage: 38:272/306 of query aligns to 1:224/224 of 4ymxA
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
26% identity, 72% coverage: 30:249/306 of query aligns to 7:224/324 of 4z9nB
4h5fA Crystal structure of an amino acid abc transporter substrate-binding protein from streptococcus pneumoniae canada mdr_19a bound to l- arginine, form 1
25% identity, 73% coverage: 31:253/306 of query aligns to 4:218/240 of 4h5fA
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
24% identity, 83% coverage: 22:276/306 of query aligns to 35:281/287 of 6h20A
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
24% identity, 83% coverage: 22:276/306 of query aligns to 35:281/287 of 6h1uA
2y7iA Structural basis for high arginine specificity in salmonella typhimurium periplasmic binding protein stm4351. (see paper)
25% identity, 76% coverage: 39:270/306 of query aligns to 7:227/228 of 2y7iA
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
24% identity, 83% coverage: 22:276/306 of query aligns to 36:282/288 of 6h2tA
P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
23% identity, 76% coverage: 39:270/306 of query aligns to 27:253/260 of P02911
5l9oB Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine (see paper)
24% identity, 77% coverage: 39:275/306 of query aligns to 12:236/243 of 5l9oB
5l9oA Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine (see paper)
24% identity, 77% coverage: 39:275/306 of query aligns to 11:235/241 of 5l9oA
>PP_1071 FitnessBrowser__Putida:PP_1071
MMRIVRQLLGAAIAAAVIASPAMAEELTGTLKKIKESGTITLGHRDSSIPFSYLAGKPEP
VGYSHDIQLAVVDALKKQLGTDIKVRYNLVTSQTRIPLVQNGTVDLECGSTTNNVERQQQ
VGFSVGIFEVGTRLLTKVKDGQPAYKDFPDLAGKNVVTTAGTTSERILKAMNADKQMKMN
VISAKDHGEAFNMLESGRAVAFMMDDALLAGEMAKARKPADWVITGTPQSYEIYGCMVRK
DDAAFKKAVDDAIVAYFKSGEVNKSYEKWFMQPIPPKGLNLNFQMSEELKKLIAEPTDKA
ADEKKS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory