SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_3954 FitnessBrowser__Putida:PP_3954 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
36% identity, 93% coverage: 23:315/316 of query aligns to 1:297/297 of 1us4A

query
sites
1us4A
A
 
A
P
 
Q
T
 
E
F
 
F
I
 
I
N
 
T
I
 
I
L
 
G
T
 
S
G
 
G
G
 
S
T
 
T
S
 
T
G
 
G
V
|
V
Y
|
Y
Y
 
F
P
 
P
V
 
V
G
 
A
V
 
T
G
 
G
I
 
I
S
 
A
Q
 
K
I
 
L
Y
 
V
S
 
N
H
 
D
G
 
A
I
 
N
E
 
V
G
 
G
S
 
I
K
 
R
T
 
A
T
 
N
V
 
A
Q
 
R
A
 
S
T
 
T
K
 
G
A
 
G
S
|
S
V
 
V
E
 
A
N
 
N
L
 
I
N
 
N
L
 
A
L
 
I
Q
 
N
A
 
A
G
 
G
R
 
E
G
 
F
E
 
E
L
 
M
A
 
A
F
 
L
A
 
A
L
x
Q
G
 
N
D
 
D
S
 
I
V
 
A
A
 
Y
D
 
Y
A
 
A
W
 
Y
K
 
Q
G
 
G
D
 
C
A
 
C
E
 
I
A
 
P
G
 
A
F
 
F
K
 
E
-
 
G
T
 
K
P
 
P
L
 
V
K
 
K
K
 
T
L
 
I
R
 
R
A
 
A
I
 
L
A
 
A
G
 
A
T
 
L
Y
 
Y
P
 
P
N
x
E
Y
 
V
I
 
V
Q
 
H
I
 
V
V
 
V
A
 
A
S
 
R
K
 
K
E
 
D
S
 
A
G
 
G
I
 
I
T
 
R
S
 
T
L
 
V
S
 
A
D
 
D
L
 
L
K
 
K
G
 
G
K
 
K
R
 
R
I
 
V
S
 
V
V
 
V
G
 
G
A
 
D
P
 
V
K
 
G
S
|
S
G
|
G
T
|
T
E
 
E
L
 
Q
N
 
N
A
 
A
R
 
R
A
 
Q
I
 
I
F
 
L
K
 
E
A
 
A
A
 
Y
G
 
G
L
 
L
T
 
T
Y
 
F
Q
 
D
D
 
D
M
 
L
G
 
G
K
 
Q
V
 
A
E
 
I
Y
 
R
L
 
V
P
 
S
Y
 
A
A
 
S
E
 
Q
S
 
G
V
 
I
E
 
Q
L
 
L
I
 
M
K
 
Q
N
 
D
R
 
K
Q
 
R
L
 
A
D
 
D
A
 
A
T
 
L
L
 
F
Q
 
Y
S
x
T
S
x
V
G
 
G
L
 
L
G
 
G
Q
 
A
A
 
S
A
 
A
I
 
I
R
 
Q
D
 
Q
L
 
L
A
 
A
A
 
L
T
 
T
L
 
T
P
 
P
V
 
I
V
 
A
F
 
L
V
 
V
P
 
A
I
 
V
P
 
D
A
 
L
E
 
N
V
 
R
V
 
I
T
 
Q
R
 
A
I
 
I
G
 
A
N
 
K
N
 
K
A
 
Y
-
 
P
-
 
F
Y
 
Y
Q
 
V
P
 
G
A
 
F
T
 
N
I
 
I
P
 
P
A
 
G
N
 
G
T
 
T
Y
 
Y
D
 
K
G
 
G
Q
 
V
S
 
D
A
 
V
D
 
T
V
 
T
S
 
P
T
 
T
A
 
V
A
 
A
I
 
V
N
 
Q
N
 
A
I
 
M
L
 
L
V
 
I
T
 
A
R
 
S
A
 
E
D
 
R
I
 
L
G
 
S
D
 
E
D
 
E
L
 
T
A
 
V
Y
 
Y
Q
 
K
M
 
F
T
 
M
K
 
K
L
 
A
I
 
V
F
 
F
E
 
G
N
 
N
L
 
L
P
 
E
R
 
A
L
 
F
V
 
K
T
 
K
A
 
I
H
 
H
A
 
P
-
 
N
A
 
L
A
 
E
K
 
R
D
 
F
I
 
F
Q
 
G
A
 
L
E
 
E
N
 
K
A
 
A
A
 
V
K
 
K
N
 
G
L
 
L
P
 
P
I
 
I
P
 
P
L
 
L
H
 
H
P
 
P
G
 
G
A
 
A
A
 
E
R
 
R
Y
 
F
F
 
Y
K
 
K
E
 
E
K
 
A
N
 
G
L
 
V
L
|
L

Query Sequence

>PP_3954 FitnessBrowser__Putida:PP_3954
MNPALRLALASTLFAVSAAAQAAPTFINILTGGTSGVYYPVGVGISQIYSHGIEGSKTTV
QATKASVENLNLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQI
VASKESGITSLSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESVEL
IKNRQLDATLQSSGLGQAAIRDLAATLPVVFVPIPAEVVTRIGNNAYQPATIPANTYDGQ
SADVSTAAINNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAENAAKNLPIP
LHPGAARYFKEKNLLP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory