Comparing PP_3954 FitnessBrowser__Putida:PP_3954 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
36% identity, 93% coverage: 23:315/316 of query aligns to 1:297/297 of 1us4A
>PP_3954 FitnessBrowser__Putida:PP_3954
MNPALRLALASTLFAVSAAAQAAPTFINILTGGTSGVYYPVGVGISQIYSHGIEGSKTTV
QATKASVENLNLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQI
VASKESGITSLSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESVEL
IKNRQLDATLQSSGLGQAAIRDLAATLPVVFVPIPAEVVTRIGNNAYQPATIPANTYDGQ
SADVSTAAINNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAENAAKNLPIP
LHPGAARYFKEKNLLP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory