Comparing Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
5abpA Substrate specificity and affinity of a protein modulated by bound water molecules (see paper)
60% identity, 90% coverage: 32:332/334 of query aligns to 2:302/305 of 5abpA
1abfA Substrate specificity and affinity of a protein modulated by bound water molecules (see paper)
60% identity, 90% coverage: 32:332/334 of query aligns to 2:302/305 of 1abfA
1abeA Novel stereospecificity of the l-arabinose-binding protein (see paper)
60% identity, 90% coverage: 32:332/334 of query aligns to 2:302/305 of 1abeA
4kzkA The structure of the periplasmic l-arabinose binding protein from burkholderia thailandensis
45% identity, 90% coverage: 32:332/334 of query aligns to 1:301/301 of 4kzkA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
26% identity, 66% coverage: 33:252/334 of query aligns to 4:217/287 of 5dteB
Sites not aligning to the query:
>Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411
MKRRRGIRSLCCAALAVTAVSLSSTLLAAEEVKIGFLVKQAEEPWFQTEWAFAEKAGKDK
GFTLIKIAVPDGEKTLSAIDSLAANGAKGFVICPPDVSLGPAIMAKAKLNGLKVIAVDDR
FVDAGGKFMEDVPYLGMAAFEVGQKQGAAMATEAKKRGWEWKDTYAVINTYNELDTGKKR
TDGSVKALEDAGMPKDHILFSALKTLDVPGSMDATNSALVKLPGAAKNLIIGGMNDNTVL
GGVRATESAGFAAANVIGIGINGTDAIGELKKPNSGFFGSMLPSPHIEGYNTASMMYEWV
TTGKEPPKYTAMDDVTLITRDNFKQELEKIGLWN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory